<p>Notes: N50 length is an indicator of measuring assembly effect, which is calculated by the accumulated length of the assembled fragments from long to short. When the sum is greater than or equal to 50% of the total length, the final accumulated fragment length is the N50 value. Mean length = for the average assembly length.</p><p>Assembly results of sugarcane transcriptome using trinity software.</p
<p>Transcript assemblies based on variable k-mer lengths ranging from 35–127 in multiples of four of...
<p>The N50 statistic is the minimum length of a feature (contig, scaffold, gap) such that using equa...
<p>Results from 44 genome assemblies produced by 7 different assemblers measured by 2 metrics:</p> <...
<p>Lengths of the assembled transcripts from Trinity for the <i>de novo</i> transcriptome.</p
<p>Summary of the <i>de novo</i> assembly results for the sugarcane transcriptome.</p
<p><sup>a</sup> Sequences constructed from Inchworm contigs by Chrysalis module and Butterfly module...
<p>Mean length: Mean length of the assembled sequences. N50: The length of the contig or unigene cor...
<p>* The N50 statistic is calculated by summing the lengths of the biggest contigs until 50% of the ...
<p>Standard metrics of transcriptome assembly (lengths and N50 in base pairs).</p
<p>The N50 length metric measures the length of the contig for which 50% of the total assembly lengt...
<p>Transcriptome <i>De novo</i> assembly statistics obtained from Velvet and Oases assembly.</p
<p>N50: 50% of the assembled bases were incorporated into sequences with length of N50 or longer. N9...
<p>Trinity outperformed all assemblers with default k-mer. The best result with SOAPdenovo-trans was...
Statistical summary of de novo transcriptome assemblies for three assembly programs.</p
<p>Transcript number and length statistics of the transcriptome assembly, transcripts with FPKM ≥ 1 ...
<p>Transcript assemblies based on variable k-mer lengths ranging from 35–127 in multiples of four of...
<p>The N50 statistic is the minimum length of a feature (contig, scaffold, gap) such that using equa...
<p>Results from 44 genome assemblies produced by 7 different assemblers measured by 2 metrics:</p> <...
<p>Lengths of the assembled transcripts from Trinity for the <i>de novo</i> transcriptome.</p
<p>Summary of the <i>de novo</i> assembly results for the sugarcane transcriptome.</p
<p><sup>a</sup> Sequences constructed from Inchworm contigs by Chrysalis module and Butterfly module...
<p>Mean length: Mean length of the assembled sequences. N50: The length of the contig or unigene cor...
<p>* The N50 statistic is calculated by summing the lengths of the biggest contigs until 50% of the ...
<p>Standard metrics of transcriptome assembly (lengths and N50 in base pairs).</p
<p>The N50 length metric measures the length of the contig for which 50% of the total assembly lengt...
<p>Transcriptome <i>De novo</i> assembly statistics obtained from Velvet and Oases assembly.</p
<p>N50: 50% of the assembled bases were incorporated into sequences with length of N50 or longer. N9...
<p>Trinity outperformed all assemblers with default k-mer. The best result with SOAPdenovo-trans was...
Statistical summary of de novo transcriptome assemblies for three assembly programs.</p
<p>Transcript number and length statistics of the transcriptome assembly, transcripts with FPKM ≥ 1 ...
<p>Transcript assemblies based on variable k-mer lengths ranging from 35–127 in multiples of four of...
<p>The N50 statistic is the minimum length of a feature (contig, scaffold, gap) such that using equa...
<p>Results from 44 genome assemblies produced by 7 different assemblers measured by 2 metrics:</p> <...