Description of mutations identified by whole genome sequencing of five Δ<i>spoT</i> clones (5, 10, 11, 12 and 13). | ORKG Ask

We use cookies to provide a better user experience.

Data Protection

Related items

Mutations identified using next generation sequencing as stratified by the European society of medical oncology scale for clinical actionability of molecular targets guidelines.

Udit Nindra (17101646)
Abhijit Pal (2389504)
Vivienne Lea (5712518)
Stephanie Hui-Su Lim (17101649)
Kate Wilkinson (16955033)
Ray Asghari (17101652)
Tara L. Roberts (8670354)
Therese M. Becker (6316550)
Mahtab Farzin (3178062)
Tristan Rutland (17101655)
Mark Lee (379836)
Scott MacKenzie (12537778)
Weng Ng (3387398)
Bin Wang (30851)
C. Soon Lee (3387407)
Wei Chua (3387395)

October 2023

Mutations identified using next generation sequencing as stratified by the European society of medic...

Whole genome sequencing of endpoint clonal isolates illustrated a wide range of mutations.

Troy G. Hammerstrom (816744)
Kathryn Beabout (816745)
Thomas P. Clements (816746)
Gerda Saxer (130487)
Yousif Shamoo (310043)

October 2015

<p>(A) Total number of mutations in each clone. The two non-hypermutators (T2_F9 and T2_H3) appear o...

Whole genome sequencing of mutant strains used in this study.

Huawen Lin (242334)
Zhengyan Zhang (792955)
Suyang Guo (792956)
Fan Chen (45761)
Jonathan M. Kessler (792957)
Yan Mei Wang (792958)
Susan K. Dutcher (105249)

September 2015

<p>* Changes are defined as being within coding regions or at intron-exon boundaries and have a Phre...

Whole genome sequencing of selected <b><i>cdc48–353</i></b><sup><b>sup</b></sup> mutants.

Irina N. Marinova (689981)
Jacob Engelbrecht (689982)
Adrian Ewald (689983)
Lasse L. Langholm (689984)
Christian Holmberg (689985)
Birthe B. Kragelund (173141)
Colin Gordon (117667)
Olaf Nielsen (505650)
Rasmus Hartmann-Petersen (117664)

February 2015

<p>Whole genome sequencing of selected <b><i>cdc48–353</i></b><sup><b>sup</b></sup> mutants.</p

Complete list of point mutations among the 11 cancer genes sequenced in the 37 HNSCC tumor tissues.

Daria A. Gaykalova (121387)
Elizabeth Mambo (11076)
Ashish Choudhary (180727)
Jeffery Houghton (542252)
Kalyan Buddavarapu (542253)
Tiffany Sanford (180724)
Will Darden (542254)
Alex Adai (542255)
Andrew Hadd (542256)
Gary Latham (542257)
Ludmila V. Danilova (479429)
Justin Bishop (542258)
Ryan J. Li (121391)
William H. Westra (121394)
Patrick Hennessey (134002)
Wayne M. Koch (542259)
Michael F. Ochs (133998)
Joseph A. Califano (121399)
Wenyue Sun (134001)

March 2014

<p>Complete list of point mutations among the 11 cancer genes sequenced in the 37 HNSCC tumor tissue...

Summary of DNA copy number aberrations identified in twenty C-TL and twelve G-TL.

Benjamin J. Blyth (543685)
Shizuko Kakinuma (763026)
Masaaki Sunaoshi (763027)
Yoshiko Amasaki (763028)
Shinobu Hirano-Sakairi (763029)
Kanae Ogawa (763030)
Ayana Shirakami (763031)
Yi Shang (128216)
Chizuru Tsuruoka (763032)
Mayumi Nishimura (455516)
Yoshiya Shimada (203843)

June 2015

<p>Copy number variations associated with recombination at the TCRβ, TCRγ, TCRα/δ, Skint, IgH, IgLκ ...

Mutations detected in the <i>proBA*</i> operon in four lineages of the Δ<i>argC proA*</i> strain after adaptation for approximately 250 generations in M9/glucose.

JohnCarlo Kristofich (5687573)
Andrew B. Morgenthaler (5687576)
Wallis R. Kinney (5687579)
Christopher C. Ebmeier (226633)
Daniel J. Snyder (838721)
William M. Old (648653)
Vaughn S. Cooper (251054)
Shelley D. Copley (1340349)

September 2018

A) Locations of point mutations; B) presence of point mutations in the population at the indicated t...

Mutations identified using next generation sequencing as stratified by the European society of medical oncology scale for clinical actionability of molecular targets guidelines.

Udit Nindra (17101646)
Abhijit Pal (2389504)
Vivienne Lea (5712518)
Stephanie Hui-Su Lim (17101649)
Kate Wilkinson (16955033)
Ray Asghari (17101652)
Tara L. Roberts (8670354)
Therese M. Becker (6316550)
Mahtab Farzin (3178062)
Tristan Rutland (17101655)
Mark Lee (379836)
Scott MacKenzie (12537778)
Weng Ng (3387398)
Bin Wang (30851)
C. Soon Lee (3387407)
Wei Chua (3387395)

October 2023

Mutations identified using next generation sequencing as stratified by the European society of medic...

Whole genome sequencing of selected <b><i>cdc48–353</i></b><sup><b>sup</b></sup> mutants.

Irina N. Marinova (689981)
Jacob Engelbrecht (689982)
Adrian Ewald (689983)
Lasse L. Langholm (689984)
Christian Holmberg (689985)
Birthe B. Kragelund (173141)
Colin Gordon (117667)
Olaf Nielsen (505650)
Rasmus Hartmann-Petersen (117664)

February 2015

<p>Whole genome sequencing of selected <b><i>cdc48–353</i></b><sup><b>sup</b></sup> mutants.</p

Complete list of point mutations among the 11 cancer genes sequenced in the 37 HNSCC tumor tissues.

Daria A. Gaykalova (121387)
Elizabeth Mambo (11076)
Ashish Choudhary (180727)
Jeffery Houghton (542252)
Kalyan Buddavarapu (542253)
Tiffany Sanford (180724)
Will Darden (542254)
Alex Adai (542255)
Andrew Hadd (542256)
Gary Latham (542257)
Ludmila V. Danilova (479429)
Justin Bishop (542258)
Ryan J. Li (121391)
William H. Westra (121394)
Patrick Hennessey (134002)
Wayne M. Koch (542259)
Michael F. Ochs (133998)
Joseph A. Califano (121399)
Wenyue Sun (134001)

March 2014

<p>Complete list of point mutations among the 11 cancer genes sequenced in the 37 HNSCC tumor tissue...

Summary of DNA copy number aberrations identified in twenty C-TL and twelve G-TL.

Benjamin J. Blyth (543685)
Shizuko Kakinuma (763026)
Masaaki Sunaoshi (763027)
Yoshiko Amasaki (763028)
Shinobu Hirano-Sakairi (763029)
Kanae Ogawa (763030)
Ayana Shirakami (763031)
Yi Shang (128216)
Chizuru Tsuruoka (763032)
Mayumi Nishimura (455516)
Yoshiya Shimada (203843)

June 2015

<p>Copy number variations associated with recombination at the TCRβ, TCRγ, TCRα/δ, Skint, IgH, IgLκ ...

Mutations detected in the <i>proBA*</i> operon in four lineages of the Δ<i>argC proA*</i> strain after adaptation for approximately 250 generations in M9/glucose.

JohnCarlo Kristofich (5687573)
Andrew B. Morgenthaler (5687576)
Wallis R. Kinney (5687579)
Christopher C. Ebmeier (226633)
Daniel J. Snyder (838721)
William M. Old (648653)
Vaughn S. Cooper (251054)
Shelley D. Copley (1340349)

September 2018

A) Locations of point mutations; B) presence of point mutations in the population at the indicated t...

Mutations identified using next generation sequencing as stratified by the European society of medical oncology scale for clinical actionability of molecular targets guidelines.

Udit Nindra (17101646)
Abhijit Pal (2389504)
Vivienne Lea (5712518)
Stephanie Hui-Su Lim (17101649)
Kate Wilkinson (16955033)
Ray Asghari (17101652)
Tara L. Roberts (8670354)
Therese M. Becker (6316550)
Mahtab Farzin (3178062)
Tristan Rutland (17101655)
Mark Lee (379836)
Scott MacKenzie (12537778)
Weng Ng (3387398)
Bin Wang (30851)
C. Soon Lee (3387407)
Wei Chua (3387395)

October 2023

Mutations identified using next generation sequencing as stratified by the European society of medic...