Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data.

A likelihood approach to estimating phylogeny from discrete morphological character data

Paul O. Lewis

January 2001

Abstract.—Evolutionary biologists have adopted simple likelihoodmodels for purposes of estimating an...

Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model

Puttick, Mark N.
O'Reilly, Joseph E.
Pisani, Davide
Donoghue, Philip C.J.

January 2019

To understand patterns and processes of the diversification of life, we require an accurate understa...

Data from: Homoplasy-based partitioning outperforms alternatives in Bayesian analysis of discrete morphological data

Rosa, Brunno
Melo, Gabriel
Barbeitos, Marcos

Bayesian analysis of morphological data is becoming increasingly popular mainly (but not only) becau...

Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data.

April M Wright
David M Hillis

Despite the introduction of likelihood-based methods for estimating phylogenetic trees from phenotyp...

Bayesian Analysis Using a Simple Likelihood Model Outperforms Parsimony for Estimation of Phylogeny from Discrete Morphological Data

April M. Wright
David M. Hillis

January 2014

Despite the introduction of likelihood-based methods for estimating phylogenetic trees from phenotyp...

Data from: Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data

O'Reilly, Joe
Puttick, Mark
Parry, Luke
Tanner, Alistair R.
Tarver, James E.
Fleming, James
Pisani, Davide
Donoghue, Philip

March 2016

Simulated data matrices from 'Bayesian methods outperform parsimony but at the expense of precision ...

Simulation files and results without missing data

April Wright (425457)

September 2014

Publication: Wright AM and Hillis DM (2014). Bayesian analysis using a simple l...

Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data

O'Reilly, JE
Puttick, MN
Parry, L
Tanner, AR
Tarver, JE
Fleming, J
Pisani, D
Donoghue, PCJ

January 2016

Different analytical methods can yield competing interpretations of evolutionary history and, curren...

Data from: Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model

Puttick, Mark N.
O'Reilly, Joseph E.
Pisani, Davide
Donoghue, Philip C.J.

August 2018

In order to understand patterns and processes of the diversification of life we require an accurate ...

Data from: Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data

O'Reilly, Joseph E.
Puttick, Mark N.
Pisani, Davide
Donoghue, Philip C. J.

October 2017

Fossil taxa are critical to inferences of historical diversity and the origins of modern biodiversit...

Data from: Bayesian and likelihood phylogenetic reconstructions of morphological traits are not discordant when taking uncertainty into consideration: a comment on Puttick et al

Brown, Joseph W.
Parins-Fukuchi, Caroline
Stull, Gregory W.
Vargas, Oscar M.
Smith, Stephen A.

May 2017

Puttick et al. (2017 Proc. R. Soc. B 284, 20162290 (doi:10.1098/rspb.2016.2290)) performed a simulat...

Raw Character Data

April Wright (425457)

September 2014

Publication: Wright AM and Hillis DM (2014). Bayesian analysis using a simple li...

Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets

Smith, M.R.

February 2019

Phylogenetic analysis aims to establish the true relationships between taxa. Different analytical me...

Scripts

April Wright (425457)

September 2014

Publication: Wright AM and Hillis DM (2014). Bayesian analysis using a simple li...

A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol

Paul O. Lewis

January 2001

Abstract.—Evolutionary biologists have adopted simple likelihoodmodels for purposes of estimating an...

A likelihood approach to estimating phylogeny from discrete morphological character data

Paul O. Lewis

January 2001

Abstract.—Evolutionary biologists have adopted simple likelihoodmodels for purposes of estimating an...

Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model

Puttick, Mark N.
O'Reilly, Joseph E.
Pisani, Davide
Donoghue, Philip C.J.

January 2019

To understand patterns and processes of the diversification of life, we require an accurate understa...

Data from: Homoplasy-based partitioning outperforms alternatives in Bayesian analysis of discrete morphological data

Rosa, Brunno
Melo, Gabriel
Barbeitos, Marcos

Bayesian analysis of morphological data is becoming increasingly popular mainly (but not only) becau...

Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data.

April M Wright
David M Hillis

Despite the introduction of likelihood-based methods for estimating phylogenetic trees from phenotyp...

Bayesian Analysis Using a Simple Likelihood Model Outperforms Parsimony for Estimation of Phylogeny from Discrete Morphological Data

April M. Wright
David M. Hillis

January 2014

Despite the introduction of likelihood-based methods for estimating phylogenetic trees from phenotyp...

Data from: Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data

O'Reilly, Joe
Puttick, Mark
Parry, Luke
Tanner, Alistair R.
Tarver, James E.
Fleming, James
Pisani, Davide
Donoghue, Philip

March 2016

Simulated data matrices from 'Bayesian methods outperform parsimony but at the expense of precision ...

Simulation files and results without missing data

April Wright (425457)

September 2014

Publication: Wright AM and Hillis DM (2014). Bayesian analysis using a simple l...

Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data

O'Reilly, JE
Puttick, MN
Parry, L
Tanner, AR
Tarver, JE
Fleming, J
Pisani, D
Donoghue, PCJ

January 2016

Different analytical methods can yield competing interpretations of evolutionary history and, curren...

Data from: Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model

Puttick, Mark N.
O'Reilly, Joseph E.
Pisani, Davide
Donoghue, Philip C.J.

August 2018

In order to understand patterns and processes of the diversification of life we require an accurate ...

Data from: Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data

O'Reilly, Joseph E.
Puttick, Mark N.
Pisani, Davide
Donoghue, Philip C. J.

October 2017

Fossil taxa are critical to inferences of historical diversity and the origins of modern biodiversit...

Data from: Bayesian and likelihood phylogenetic reconstructions of morphological traits are not discordant when taking uncertainty into consideration: a comment on Puttick et al

Brown, Joseph W.
Parins-Fukuchi, Caroline
Stull, Gregory W.
Vargas, Oscar M.
Smith, Stephen A.

May 2017

Puttick et al. (2017 Proc. R. Soc. B 284, 20162290 (doi:10.1098/rspb.2016.2290)) performed a simulat...

Raw Character Data

April Wright (425457)

September 2014

Publication: Wright AM and Hillis DM (2014). Bayesian analysis using a simple li...

Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets

Smith, M.R.

February 2019

Phylogenetic analysis aims to establish the true relationships between taxa. Different analytical me...

Scripts

April Wright (425457)

September 2014

Publication: Wright AM and Hillis DM (2014). Bayesian analysis using a simple li...

A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol

Paul O. Lewis

January 2001

Abstract.—Evolutionary biologists have adopted simple likelihoodmodels for purposes of estimating an...

A likelihood approach to estimating phylogeny from discrete morphological character data

Paul O. Lewis

January 2001

Abstract.—Evolutionary biologists have adopted simple likelihoodmodels for purposes of estimating an...

Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model

Puttick, Mark N.
O'Reilly, Joseph E.
Pisani, Davide
Donoghue, Philip C.J.

January 2019

To understand patterns and processes of the diversification of life, we require an accurate understa...

Data from: Homoplasy-based partitioning outperforms alternatives in Bayesian analysis of discrete morphological data

Rosa, Brunno
Melo, Gabriel
Barbeitos, Marcos

Bayesian analysis of morphological data is becoming increasingly popular mainly (but not only) becau...

Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data.

Abstract

Extracted data

Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data.

Abstract

Extracted data

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