Genome features of SAGs and comparisons to their reference genome.

a<p><i>S. alvi</i> SAGs were compared to the reference genome of strain wkB2. <i>G. apicola</i> SAGs were compared to the reference genome of strain wkB1.</p>b<p>Estimated genome coverage is based on the presence of 206 and 189 genes constituting the minimal, essential gene set of wkB1 and wkB2, respectively. The minimal gene sets were determined as described previously <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1004596#pgen.1004596-Engel2" target="_blank">[22]</a>, <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1004596#pgen.1004596-Gil1" target="_blank">[97]</a>.</p>c<p>Id, identities.</p>d<p><i>d</i>S, rate of synonymous substitutions per synonymous site, averaged over all shared genes.</p>e<p><i>d</i>N/<i>d</i>S, ratio of <i>d</i>N (rate of non-synonymous substitutions per non-synonymous site) to <i>d</i>S.</p><p>Genome features of SAGs and comparisons to their reference genome.