<p>(<b>A</b>) Artificial NES datasets. (<b>B</b>) DUB NES datasets. (<b>C</b>) Valid NES datasets. (<b>D</b>) Sp-protein datasets. The positive and negative datasets (B-P2 and B-N2) of the DUB datasets and the negative training dataset (D-N2) of the Sp-protein datasets were always included in the training data for the profile optimization, whereas the other training datasets were used only when they were not contained in a test dataset to be used. For example, when we conducted the prediction test with the test datasets, A-P1 and A-N1, we used the optimized profiles for NESmapper, that were trained with C-N2, in addition to B-P2, B-N2, and D-N2.</p
<p>Dataset 1: List of 5422 native protein structures<br>The positive dataset (PSN-QA_positive) used ...
Shown are the dummy PREdictor, the PyPREdictor trained with PREs (positives) and dummy PREs (negativ...
Lden Spike data, for different subsets of probesets. We show plots for three potential choices of tr...
a<p>Three test datasets were used for the performance evaluation. (1) The artificial NES set: 163 po...
<p>(<b>A</b>) ROC curve generated with artificial NES datasets. For the artificial NES sets, 163 pos...
<p>Prediction accuracies of the indicated methods and tools were determined with the artificial NES ...
<p>(A) Self-test on the Drosophila Ago1-IP dataset consist of Set I (positive examples) and equal nu...
<p>The figure shows the number of protein pairs in the APMS datasets of Krogan et al. and Gavin et a...
<p>Different combinations of three types of nsSNPs are used for each of the three classification pro...
<p>The “False Negatives” column shows the total number of false negatives produced by each algorithm...
<p>(<b>A</b>) Boxplot showing the median (thick line), the lower and upper quartiles (box) and the m...
- negTrainDataset.fa - negative training dataset - posTrainDataset.fa - positive training dataset ...
<p>The percentage shows the agreement of the detection and HuGEindex prediction. Specific and ubiqui...
<p>Individual models with a better performance than the baseline model are given a decreasing score ...
The choice of negative training data for machine learning is a little explored issue in chemoinforma...
<p>Dataset 1: List of 5422 native protein structures<br>The positive dataset (PSN-QA_positive) used ...
Shown are the dummy PREdictor, the PyPREdictor trained with PREs (positives) and dummy PREs (negativ...
Lden Spike data, for different subsets of probesets. We show plots for three potential choices of tr...
a<p>Three test datasets were used for the performance evaluation. (1) The artificial NES set: 163 po...
<p>(<b>A</b>) ROC curve generated with artificial NES datasets. For the artificial NES sets, 163 pos...
<p>Prediction accuracies of the indicated methods and tools were determined with the artificial NES ...
<p>(A) Self-test on the Drosophila Ago1-IP dataset consist of Set I (positive examples) and equal nu...
<p>The figure shows the number of protein pairs in the APMS datasets of Krogan et al. and Gavin et a...
<p>Different combinations of three types of nsSNPs are used for each of the three classification pro...
<p>The “False Negatives” column shows the total number of false negatives produced by each algorithm...
<p>(<b>A</b>) Boxplot showing the median (thick line), the lower and upper quartiles (box) and the m...
- negTrainDataset.fa - negative training dataset - posTrainDataset.fa - positive training dataset ...
<p>The percentage shows the agreement of the detection and HuGEindex prediction. Specific and ubiqui...
<p>Individual models with a better performance than the baseline model are given a decreasing score ...
The choice of negative training data for machine learning is a little explored issue in chemoinforma...
<p>Dataset 1: List of 5422 native protein structures<br>The positive dataset (PSN-QA_positive) used ...
Shown are the dummy PREdictor, the PyPREdictor trained with PREs (positives) and dummy PREs (negativ...
Lden Spike data, for different subsets of probesets. We show plots for three potential choices of tr...