a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the CHARMM force field). The listed donor and acceptor pairs satisfy the criteria for the HB over 50% of time during the whole MD simulation (distance between heavy atoms <3.5 Å, values higher than 3.5 are included only for comparison).</p>b<p> The occupancies reflect the % of the time that the HB exists with respect to the whole time.</p>c<p> The averaged distance ± standard deviation between hydrogen-acceptor and hydrogen-donor heavy atoms during the time that the HB is formed.</p><p>Hydrogen-Bond occupancies analysis from the results of MD simulations for the peptide-PKA interactions between mutated amino acids.</p
The dynamical behavior of model peptides was evaluated with respect to their ability to form interna...
A careful comparison of the distribution in the (R, θ )-plane of all NH ... O hydrogen bonds with th...
<p>The normalized frequency of occurring H-bonds over simulation time is shown. The frequency is zer...
a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the ...
a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the ...
<p>The percentage occupancy of H-bonds averaged over the last 25 ns of simulation time between the n...
The dynamical behavior of model peptides was evaluated with respect to their ability to form interna...
<p>Hydrogen bonds changing in occupancy >2 fold as a result of the A<sub>117</sub>V mutation in simu...
<p>A: Average hydrogen bonds lifetimes during the last 6 ns of the simulations of hNaa50p with MLG (...
Although the peptide CαH group has historically not been thought to form hydrogen bonds within prote...
Although the peptide CαH group has historically not been thought to form hydrogen bonds within prote...
Although the peptide CαH group has historically not been thought to form hydrogen bonds within prote...
<p>(A) Snapshots at 1 ps, 300 ps, 700 ps and 1000 ps. (B) Distances from the O<sup>ε1</sup> and O<su...
We study the dynamic propensity of the backbone hydrogen bonds of the protein MDM2 (the natural regu...
<p>FireDock energy for the best ranked complex initial distance between the H-bond donor and the acc...
The dynamical behavior of model peptides was evaluated with respect to their ability to form interna...
A careful comparison of the distribution in the (R, θ )-plane of all NH ... O hydrogen bonds with th...
<p>The normalized frequency of occurring H-bonds over simulation time is shown. The frequency is zer...
a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the ...
a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the ...
<p>The percentage occupancy of H-bonds averaged over the last 25 ns of simulation time between the n...
The dynamical behavior of model peptides was evaluated with respect to their ability to form interna...
<p>Hydrogen bonds changing in occupancy >2 fold as a result of the A<sub>117</sub>V mutation in simu...
<p>A: Average hydrogen bonds lifetimes during the last 6 ns of the simulations of hNaa50p with MLG (...
Although the peptide CαH group has historically not been thought to form hydrogen bonds within prote...
Although the peptide CαH group has historically not been thought to form hydrogen bonds within prote...
Although the peptide CαH group has historically not been thought to form hydrogen bonds within prote...
<p>(A) Snapshots at 1 ps, 300 ps, 700 ps and 1000 ps. (B) Distances from the O<sup>ε1</sup> and O<su...
We study the dynamic propensity of the backbone hydrogen bonds of the protein MDM2 (the natural regu...
<p>FireDock energy for the best ranked complex initial distance between the H-bond donor and the acc...
The dynamical behavior of model peptides was evaluated with respect to their ability to form interna...
A careful comparison of the distribution in the (R, θ )-plane of all NH ... O hydrogen bonds with th...
<p>The normalized frequency of occurring H-bonds over simulation time is shown. The frequency is zer...