Allele frequency of rs368234815 - ΔG allele (blue) and TT allele (green) for each population from the 1000 Genomes dataset.

Genome-wide SNP typing reveals signatures of population history

Hughes, Austin L.
Welch, Robert
Puri, Vinita
Matthews, Casey
Haque, Kashif
Chanock, Stephen J.
Yeager, Meredith

July 2008

AbstractSingle-nucleotide polymorphism (SNP) arrays have become a popular technology for disease-ass...

Ancestry analysis of BAC clones that are the source of the human genome reference sequence across the chromosome 1 locus.

David Reich (27753)
Michael A. Nalls (113680)
W. H. Linda Kao (160779)
Ermeg L. Akylbekova (176947)
Arti Tandon (81924)
Nick Patterson (27751)
James Mullikin (374795)
Wen-Chi Hsueh (264276)
Ching-Yu Cheng (159319)
Josef Coresh (93441)
Eric Boerwinkle (36288)
Man Li (81239)
Alicja Waliszewska (84596)
Julie Neubauer (89815)
Rongling Li (102079)
Tennille S. Leak (156515)
Lynette Ekunwe (223831)
Joe C. Files (374796)
Cheryl L. Hardy (374797)
Joseph M. Zmuda (202160)
Herman A. Taylor (176958)
Elad Ziv (1263)
Tamara B. Harris (110195)
James G. Wilson (113688)

February 2013

The human genome reference sequence across the admixture peak is pieced together from 5 BAC clone...

Large Allele Frequency Differences between Human Continental Groups are more Likely to have Occurred by Drift During range Expansions than by Selection

Hofer, T.
Ray, Nicolas
Wegmann, D.
Excoffier, Laurent Georges Louis

January 2009

Several studies have found strikingly different allele frequencies between continents. This has been...

Allele frequency distributions of all HapMap SNPs (black), Illumina 1M SNPs (blue), and GWAS associations in CEU (red), and simulated synthetic associations (green).

Samuel P. Dickson (242256)
Kai Wang (21246)
Ian Krantz (264398)
Hakon Hakonarson (102913)
David B. Goldstein (194563)

February 2013

The allele frequencies show both minor and major allele frequencies. GWAS associations have a cle...

Frequencies of the rs1815739 derived allele in autochthonous populations pooled into seven geographical groups.

Carlos Eduardo G. Amorim (694871)
Victor Acuña-Alonzo (3284028)
Francisco M. Salzano (105253)
Maria Cátira Bortolini (36832)
Tábita Hünemeier (105228)

February 2015

Frequencies of the rs1815739 derived allele in autochthonous populations pooled into seven geogra...

Demographic history and rare allele sharing among human populations

Gravel, Simon
Henn, Brenna M.
Gutenkunst, Ryan N.
Indap, Amit R.
Marth, Gabor T.
Clark, Andrew G.
Yu, Fuli
Gibbs, Richard A.
Bustamante, Carlos D.
Altshuler, D. L.
Durbin, R. M.
Abecasis, G. R.
Bentley, D. R.
Chakravarti, A.
Clark, A. G.
Collins, F. S.
De La Vega, F. M.
Donnelly, P.
Egholm, M.
Flicek, P.
Gabriel, S. B.
Gibbs, R. A.
Knoppers, B. M.
Lander, E. S.
Lehrach, H.
Mardis, E. R.
McVean, G. A.
Nickerson, D. A.
Peltonen, L.
Schafer, A. J.
Sherry, S. T.
Wang, J.
Wilson, R. K.
Gibbs, R. A.
Deiros, D.
Metzker, M.
Muzny, D.
Reid, J.
Wheeler, D.
Wang, J.
Li, J.
Jian, M.
Li, G.
Li, R.
Liang, H.
Tian, G.
Wang, B.
Wang, J.
Wang, W.
Yang, H.
Zhang, X.
Zheng, H.
Lander, E. S.
Altshuler, D. L.
Ambrogio, L.
Bloom, T.
Cibulskis, K.
Fennell, T. J.
Gabriel, S. B.
Jaffe, D. B.
Shefler, E.
Sougnez, C. L.
Bentley, D. R.
Gormley, N.
Humphray, S.
Kingsbury, Z.
Koko-Gonzales, P.
Stone, J.
McKernan, K. J.
Costa, G. L.
Ichikawa, J. K.
Lee, C. C.
Sudbrak, R.
Lehrach, H.
Borodina, T. A.
Dahl, A.
Davydov, A. N.
Marquardt, P.
Mertes, F.
Nietfeld, W.
Rosenstiel, P.
Schreiber, S.
Soldatov, A. V.
Timmermann, B.
Tolzmann, M.
Egholm, M.
Affourtit, J.
Ashworth, D.
Attiya, S.
Bachorski, M.
Buglione, E.
Burke, A.
Caprio, A.
Celone, C.
Clark, S.
Conners, D.
Desany, B.
Gu, L.
Guccione, L.
Kao, K.
Kebbel, A.
Knowlton, J.
Labrecque, M.
McDade, L.
Mealmaker, C.
Minderman, M.
Nawrocki, A.
Niazi, F.
Pareja, K.
Ramenani, R.
Riches, D.
Song, W.
Turcotte, C.
Wang, S.
Mardis, E. R.
Wilson, R. K.
Dooling, D.
Fulton, L.
Fulton, R.
Weinstock, G.
Durbin, R. M.
Burton, J.
Carter, D. M.
Churcher, C.
Coffey, A.
Cox, A.
Palotie, A.
Quail, M.
Skelly, T.
Stalker, J.
Swerdlow, H. P.
Turner, D.
De Witte, A.
Giles, S.
Gibbs, R. A.
Wheeler, D.
Bainbridge, M.
Challis, D.
Sabo, A.
Yu, F.
Yu, J.
Wang, J.
Fang, X.
Guo, X.
Li, R.
Li, Y.
Luo, R.
Tai, S.
Wu, H.
Zheng, H.
Zheng, X.
Zhou, Y.
Li, G.
Wang, J.
Yang, H.
Marth, G. T.
Garrison, E. P.
Huang, W.
Indap, A.
Kural, D.
Lee, W.-P.
Leong, W. F.
Quinlan, A. R.
Stewart, C.
Stromberg, M. P.
Ward, A. N.
Wu, J.
Lee, C.
Mills, R. E.
Shi, X.
Daly, M. J.
DePristo, M. A.
Altshuler, D. L.
Ball, A. D.
Banks, E.
Bloom, T.
Browning, B. L.
Cibulskis, K.
Fennell, T. J.
Garimella, K. V.
Grossman, S. R.
Handsaker, R. E.
Hanna, M.
Hartl, C.
Jaffe, D. B.
Kernytsky, A. M.
Korn, J. M.
Li, H.
Maguire, J. R.
McCarroll, S. A.
McKenna, A.
Nemesh, J. C.
Philippakis, A. A.
Poplin, R. E.
Price, A.
Rivas, M. A.
Sabeti, P. C.
Schaffner, S. F.
Shefler, E.
Shlyakhter, I. A.
Cooper, David Neil
Ball, E. V.
Mort, M.
Phillips, A. D.
Stenson, P. D.
Sebat, J.
Makarov, V.
Ye, K.
Yoon, S. C.
Bustamante, C. D.
Clark, A. G.
Boyko, A.
Degenhardt, J.
Gravel, S.
Gutenkunst, R. N.
Kaganovich, M.
Keinan, A.
Lacroute, P.
Ma, X.
Reynolds, A.
Clarke, L.
Flicek, P.
Cunningham, F.
Herrero, J.
Keenen, S.
Kulesha, E.
Leinonen, R.
McLaren, W. M.
Radhakrishnan, R.
Smith, R. E.
Zalunin, V.
Zheng-Bradley, X.
Korbel, J. O.
Stutz, A. M.
Humphray, S.
Bauer, M.
Cheetham, R. K.
Cox, T.
Eberle, M.
James, T.
Kahn, S.
Murray, L.
Chakravarti, A.
Ye, K.
De La Vega, F. M.
Fu, Y.
Hyland, F. C. L.
Manning, J. M.
McLaughlin, S. F.
Peckham, H. E.
Sakarya, O.
Sun, Y. A.
Tsung, E. F.
Batzer, M. A.
Konkel, M. K.
Walker, J. A.
Sudbrak, R.
Albrecht, M. W.
Amstislavskiy, V. S.
Herwig, R.
Parkhomchuk, D. V.
Sherry, S. T.
Agarwala, R.
Khouri, H. M.
Morgulis, A. O.
Paschall, J. E.
Phan, L. D.
Rotmistrovsky, K. E.
Sanders, R. D.
Shumway, M. F.
Xiao, C.
McVean, G. A.
Auton, A.
Iqbal, Z.
Lunter, G.
Marchini, J. L.
Moutsianas, L.
Myers, S.
Tumian, A.
Desany, B.
Knight, J.
Winer, R.
Craig, D. W.
Beckstrom-Sternberg, S. M.
Christoforides, A.
Kurdoglu, A. A.
Pearson, J. V.
Sinari, S. A.
Tembe, W. D.
Haussler, D.
Hinrichs, A. S.
Katzman, S. J.
Kern, A.
Kuhn, R. M.
Przeworski, M.
Hernandez, R. D.
Howie, B.
Kelley, J. L.
Melton, S. C.
Abecasis, G. R.
Li, Y.
Anderson, P.
Blackwell, T.
Chen, W.
Cookson, W. O.
Ding, J.
Kang, H. M.
Lathrop, M.
Liang, L.
Moffatt, M. F.
Scheet, P.
Sidore, C.
Snyder, M.
Zhan, X.
Zollner, S.
Awadalla, P.
Casals, F.
Idaghdour, Y.
Keebler, J.
Stone, E. A.
Zilversmit, M.
Jorde, L.
Xing, J.
Eichler, E. E.
Aksay, G.
Alkan, C.
Hajirasouliha, I.
Hormozdiari, F.
Kidd, J. M.
Sahinalp, S. C.
Sudmant, P. H.
Mardis, E. R.
Chen, K.
Chinwalla, A.
Ding, L.
Koboldt, D. C.
McLellan, M. D.
Dooling, D.
Weinstock, G.
Wallis, J. W.
Wendl, M. C.
Zhang, Q.
Durbin, R. M.
Albers, C. A.
Ayub, Q.
Balasubramaniam, S.
Barrett, J. C.
Carter, D. M.
Chen, Y.
Conrad, D. F.
Danecek, P.
Dermitzakis, E. T.
Hu, M.
Huang, N.
Hurles, M. E.
Jin, H.
Jostins, L.
Keane, T. M.
Le, S. Q.
Lindsay, S.
Long, Q.
MacArthur, D. G.
Montgomery, S. B.
Parts, L.
Stalker, J.
Tyler-Smith, C.
Walter, K.
Zhang, Y.
Gerstein, M. B.
Snyder, M.
Abyzov, A.
Balasubramanian, S.
Bjornson, R.
Du, J.
Grubert, F.
Habegger, L.
Haraksingh, R.
Jee, J.
Khurana, E.
Lam, H. Y. K.
Leng, J.
Mu, X. J.
Urban, A. E.
Zhang, Z.
Li, Y.
Luo, R.
Marth, G. T.
Garrison, E. P.
Kural, D.
Quinlan, A. R.
Stewart, C.
Stromberg, M. P.
Ward, A. N.
Wu, J.
Lee, C.
Mills, R. E.
Shi, X.
McCarroll, S. A.
Banks, E.
DePristo, M. A.
Handsaker, R. E.
Hartl, C.
Korn, J. M.
Li, H.
Nemesh, J. C.
Sebat, J.
Makarov, V.
Ye, K.
Yoon, S. C.
Degenhardt, J.
Kaganovich, M.
Clarke, L.
Smith, R. E.
Zheng-Bradley, X.
Korbel, J. O.
Humphray, S.
Cheetham, R. K.
Eberle, M.
Kahn, S.
Murray, L.
Ye, K.
De La Vega, F. M.
Fu, Y.
Peckham, H. E.
Sun, Y. A.
Batzer, M. A.
Konkel, M. K.
Walker, J. A.
Xiao, C.
Iqbal, Z.
Desany, B.
Blackwell, T.
Snyder, M.
Xing, J.
Eichler, E. E.
Aksay, G.
Alkan, C.
Hajirasouliha, I.
Hormozdiari, F.
Kidd, J. M.
Chen, K.
Chinwalla, A.
Ding, L.
McLellan, M. D.
Wallis, J. W.
Hurles, M. E.
Conrad, D. F.
Walter, K.
Zhang, Y.
Gerstein, M. B.
Snyder, M.
Abyzov, A.
Du, J.
Grubert, F.
Haraksingh, R.
Jee, J.
Khurana, E.
Lam, H. Y. K.
Leng, J.
Mu, X. J.
Urban, A. E.
Zhang, Z.
Gibbs, R. A.
Bainbridge, M.
Challis, D.
Coafra, C.
Dinh, H.
Kovar, C.
Lee, S.
Muzny, D.
Nazareth, L.
Reid, J.
Sabo, A.
Yu, F.
Yu, J.
Marth, G. T.
Garrison, E. P.
Indap, A.
Leong, W. F.
Quinlan, A. R.
Stewart, C.
Ward, A. N.
Wu, J.
Cibulskis, K.
Fennell, T. J.
Gabriel, S. B.
Garimella, K. V.
Hartl, C.
Shefler, E.
Sougnez, C. L.
Wilkinson, J.
Clark, A. G.
Gravel, S.
Grubert, F.
Clarke, L.
Flicek, P.
Smith, R. E.
Zheng-Bradley, X.
Sherry, S. T.
Khouri, H. M.
Paschall, J. E.
Shumway, M. F.
Xiao, C.
McVean, G. A.
Katzman, S. J.
Abecasis, G. R.
Blackwell, T.
Mardis, E. R.
Dooling, D.
Fulton, L.
Fulton, R.
Koboldt, D. C.
Durbin, R. M.
Balasubramaniam, S.
Coffey, A.
Keane, T. M.
MacArthur, D. G.
Palotie, A.
Scott, C.
Stalker, J.
Tyler-Smith, C.
Gerstein, M. B.
Balasubramanian, S.
Chakravarti, A.
Knoppers, B. M.
Abecasis, G. R.
Bustamante, C. D.
Gharani, N.
Gibbs, R. A.
Jorde, L.
Kaye, J. S.
Kent, A.
Li, T.
McGuire, A. L.
McVean, G. A.
Ossorio, P. N.
Rotimi, C. N.
Su, Y.
Toji, L. H.
TylerSmith, C.
Brooks, L. D.
Felsenfeld, A. L.
McEwen, J. E.
Abdallah, A.
Juenger, C. R.
Clemm, N. C.
Collins, F. S.
Duncanson, A.
Green, E. D.
Guyer, M. S.
Peterson, J. L.
Schafer, A. J.
Abecasis, G. R.
Altshuler, D. L.
Auton, A.
Brooks, L. D.
Durbin, R. M.
Gibbs, R. A.
Hurles, M. E.
McVean, G. A.

January 2011

High-throughput sequencing technology enables population-level surveys of human genomic variation. H...

Geographic distribution of derived allele frequencies in a 100

Rasika A. Mathias (134405)
Wenqing Fu (134407)
Joshua M. Akey (77042)
Hannah C. Ainsworth (134410)
Dara G. Torgerson (134413)
Ingo Ruczinski (15765)
Susan Sergeant (134416)
Kathleen C. Barnes (134420)
Floyd H. Chilton (134423)

September 2012

kb region surrounding rs174537 in the 52 populations represented in the Human Genome Diversit...

Ancestral allele frequency of rs3809922 C and rs3809923 C in different populations based on data from the 1000 Genomes Project.

Erli Wang (405970)
Wenfei Jin (197652)
Wenyuan Duan (405972)
Bin Qiao (181287)
Shuna Sun (405971)
Guoying Huang (405973)
Kaihu Shi (454963)
Li Jin (40265)
Hongyan Wang (41596)

September 2013

*The detailed information of these populations can be found at the website: <a href="http://www.1...

Allele frequencies and genotype frequencies of M003-A06 in different human ethnic groups.

Huan-Chieh Chien (130556)
Hurng-Yi Wang (130558)
Yi-Ning Su (130560)
Kuan-Yu Lai (130561)
Li-Chen Lu (130562)
Pau-Chung Chen (130563)
Shih-Feng Tsai (57598)
Chung-I Wu (51710)
Wu-Shiun Hsieh (130568)
Che-Kun James Shen (130569)

October 2012

The frequencies of M003-A06 among different ethnic groups except for the Taiwanese are derived fr...

Genome-wide SNP analysis of human genome

Mao, Huzhang

January 2013

Allelic frequency difference across population can provide valuable insight into population differen...

‘523’ Allele frequencies in non US geographical cohorts (Far Eastern and West Africa).

Colton Linnertz (258148)
Ann M. Saunders (332694)
Michael W. Lutz (332695)
Donna M. Crenshaw (332696)
Iris Grossman (332697)
Daniel K. Burns (332698)
Keith E. Whitfield (332699)
Michael A. Hauser (51606)
Jeanette J. McCarthy (215069)
Megan Ulmer (332700)
Rand Allingham (332701)
Kathleen A. Welsh-Bohmer (258166)
Allen D. Roses (268034)
Ornit Chiba-Falek (258169)

February 2013

Genotypes determination was performed by Polymorphic, Inc. using a sequencing based assay.</p

Frequency of rs12979860 C and T alleles in the diverse ethnic groups present in the 1000 Genomes Project database.

Giuseppe Indolfi (366873)
Giusi Mangone (510305)
Elisa Bartolini (510306)
Gabriella Nebbia (510307)
Pier Luigi Calvo (510308)
Maria Moriondo (366871)
Pier-Angelo Tovo (510309)
Maurizio de Martino (304820)
Chiara Azzari (366867)
Massimo Resti (366881)

January 2014

Frequency of rs12979860 C and T alleles in the diverse ethnic groups present in the 1000 Genomes ...

Frequency of 374F (rs16891982) and the A allele (intronic rs35397) in a) the most pigmented (Dark) and least pigmented (Light) individuals of the skin reflectance distribution from our study and in b) the populations from 1KGP.

Saioa López (610268)
Óscar García (265706)
Iñaki Yurrebaso (610269)
Carlos Flores (4224)
Marialbert Acosta-Herrera (533408)
Hua Chen (43790)
Jesús Gardeazabal (5658757)
Jesús María Careaga (553471)
María Dolores Boyano (553472)
Ana Sánchez (3015789)
Juan Antonio Ratón-Nieto (553470)
Arrate Sevilla (610270)
Isabel Smith-Zubiaga (610271)
Alicia García de Galdeano (610272)
Conrado Martinez-Cadenas (223431)
Neskuts Izagirre (164727)
Concepción de la Rúa (168409)
Santos Alonso (164722)

August 2014

n: number of chromosomes.1North Europe: CEU (Utah residents with Northern and Western Euro...

Allele and genotype frequencies of the CYP19A1 SNPs in various populations.

Athena Starlard-Davenport (688904)
Mohammed S. Orloff (180837)
Ishwori Dhakal (117445)
Rosalind B. Penney (688905)
Susan A. Kadlubar (688906)

February 2015

African Americans; EA: European Americans; CEU: Utah residents with Northern and European ancestr...

Population based allele frequencies of disease associated polymorphisms in the Personalized Medicine Research Project

Stefanski Elisha L
Ivacic Lynn C
Cross Deanna S
McCarty Catherine A

June 2010

Abstract Background There is a lack of knowledge regarding the frequency of disease associated polym...

Genome-wide SNP typing reveals signatures of population history

Hughes, Austin L.
Welch, Robert
Puri, Vinita
Matthews, Casey
Haque, Kashif
Chanock, Stephen J.
Yeager, Meredith

July 2008

AbstractSingle-nucleotide polymorphism (SNP) arrays have become a popular technology for disease-ass...

Ancestry analysis of BAC clones that are the source of the human genome reference sequence across the chromosome 1 locus.

David Reich (27753)
Michael A. Nalls (113680)
W. H. Linda Kao (160779)
Ermeg L. Akylbekova (176947)
Arti Tandon (81924)
Nick Patterson (27751)
James Mullikin (374795)
Wen-Chi Hsueh (264276)
Ching-Yu Cheng (159319)
Josef Coresh (93441)
Eric Boerwinkle (36288)
Man Li (81239)
Alicja Waliszewska (84596)
Julie Neubauer (89815)
Rongling Li (102079)
Tennille S. Leak (156515)
Lynette Ekunwe (223831)
Joe C. Files (374796)
Cheryl L. Hardy (374797)
Joseph M. Zmuda (202160)
Herman A. Taylor (176958)
Elad Ziv (1263)
Tamara B. Harris (110195)
James G. Wilson (113688)

February 2013

The human genome reference sequence across the admixture peak is pieced together from 5 BAC clone...

Large Allele Frequency Differences between Human Continental Groups are more Likely to have Occurred by Drift During range Expansions than by Selection

Hofer, T.
Ray, Nicolas
Wegmann, D.
Excoffier, Laurent Georges Louis

January 2009

Several studies have found strikingly different allele frequencies between continents. This has been...

Allele frequency distributions of all HapMap SNPs (black), Illumina 1M SNPs (blue), and GWAS associations in CEU (red), and simulated synthetic associations (green).

Samuel P. Dickson (242256)
Kai Wang (21246)
Ian Krantz (264398)
Hakon Hakonarson (102913)
David B. Goldstein (194563)

February 2013

The allele frequencies show both minor and major allele frequencies. GWAS associations have a cle...

Frequencies of the rs1815739 derived allele in autochthonous populations pooled into seven geographical groups.

Carlos Eduardo G. Amorim (694871)
Victor Acuña-Alonzo (3284028)
Francisco M. Salzano (105253)
Maria Cátira Bortolini (36832)
Tábita Hünemeier (105228)

February 2015

Frequencies of the rs1815739 derived allele in autochthonous populations pooled into seven geogra...

Demographic history and rare allele sharing among human populations

Gravel, Simon
Henn, Brenna M.
Gutenkunst, Ryan N.
Indap, Amit R.
Marth, Gabor T.
Clark, Andrew G.
Yu, Fuli
Gibbs, Richard A.
Bustamante, Carlos D.
Altshuler, D. L.
Durbin, R. M.
Abecasis, G. R.
Bentley, D. R.
Chakravarti, A.
Clark, A. G.
Collins, F. S.
De La Vega, F. M.
Donnelly, P.
Egholm, M.
Flicek, P.
Gabriel, S. B.
Gibbs, R. A.
Knoppers, B. M.
Lander, E. S.
Lehrach, H.
Mardis, E. R.
McVean, G. A.
Nickerson, D. A.
Peltonen, L.
Schafer, A. J.
Sherry, S. T.
Wang, J.
Wilson, R. K.
Gibbs, R. A.
Deiros, D.
Metzker, M.
Muzny, D.
Reid, J.
Wheeler, D.
Wang, J.
Li, J.
Jian, M.
Li, G.
Li, R.
Liang, H.
Tian, G.
Wang, B.
Wang, J.
Wang, W.
Yang, H.
Zhang, X.
Zheng, H.
Lander, E. S.
Altshuler, D. L.
Ambrogio, L.
Bloom, T.
Cibulskis, K.
Fennell, T. J.
Gabriel, S. B.
Jaffe, D. B.
Shefler, E.
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Tai, S.
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Marth, G. T.
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Huang, W.
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Lee, C.
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Li, H.
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Poplin, R. E.
Price, A.
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Schaffner, S. F.
Shefler, E.
Shlyakhter, I. A.
Cooper, David Neil
Ball, E. V.
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Stenson, P. D.
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Makarov, V.
Ye, K.
Yoon, S. C.
Bustamante, C. D.
Clark, A. G.
Boyko, A.
Degenhardt, J.
Gravel, S.
Gutenkunst, R. N.
Kaganovich, M.
Keinan, A.
Lacroute, P.
Ma, X.
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Clarke, L.
Flicek, P.
Cunningham, F.
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Keenen, S.
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McLaren, W. M.
Radhakrishnan, R.
Smith, R. E.
Zalunin, V.
Zheng-Bradley, X.
Korbel, J. O.
Stutz, A. M.
Humphray, S.
Bauer, M.
Cheetham, R. K.
Cox, T.
Eberle, M.
James, T.
Kahn, S.
Murray, L.
Chakravarti, A.
Ye, K.
De La Vega, F. M.
Fu, Y.
Hyland, F. C. L.
Manning, J. M.
McLaughlin, S. F.
Peckham, H. E.
Sakarya, O.
Sun, Y. A.
Tsung, E. F.
Batzer, M. A.
Konkel, M. K.
Walker, J. A.
Sudbrak, R.
Albrecht, M. W.
Amstislavskiy, V. S.
Herwig, R.
Parkhomchuk, D. V.
Sherry, S. T.
Agarwala, R.
Khouri, H. M.
Morgulis, A. O.
Paschall, J. E.
Phan, L. D.
Rotmistrovsky, K. E.
Sanders, R. D.
Shumway, M. F.
Xiao, C.
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Auton, A.
Iqbal, Z.
Lunter, G.
Marchini, J. L.
Moutsianas, L.
Myers, S.
Tumian, A.
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Knight, J.
Winer, R.
Craig, D. W.
Beckstrom-Sternberg, S. M.
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Kurdoglu, A. A.
Pearson, J. V.
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Haussler, D.
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Katzman, S. J.
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Kuhn, R. M.
Przeworski, M.
Hernandez, R. D.
Howie, B.
Kelley, J. L.
Melton, S. C.
Abecasis, G. R.
Li, Y.
Anderson, P.
Blackwell, T.
Chen, W.
Cookson, W. O.
Ding, J.
Kang, H. M.
Lathrop, M.
Liang, L.
Moffatt, M. F.
Scheet, P.
Sidore, C.
Snyder, M.
Zhan, X.
Zollner, S.
Awadalla, P.
Casals, F.
Idaghdour, Y.
Keebler, J.
Stone, E. A.
Zilversmit, M.
Jorde, L.
Xing, J.
Eichler, E. E.
Aksay, G.
Alkan, C.
Hajirasouliha, I.
Hormozdiari, F.
Kidd, J. M.
Sahinalp, S. C.
Sudmant, P. H.
Mardis, E. R.
Chen, K.
Chinwalla, A.
Ding, L.
Koboldt, D. C.
McLellan, M. D.
Dooling, D.
Weinstock, G.
Wallis, J. W.
Wendl, M. C.
Zhang, Q.
Durbin, R. M.
Albers, C. A.
Ayub, Q.
Balasubramaniam, S.
Barrett, J. C.
Carter, D. M.
Chen, Y.
Conrad, D. F.
Danecek, P.
Dermitzakis, E. T.
Hu, M.
Huang, N.
Hurles, M. E.
Jin, H.
Jostins, L.
Keane, T. M.
Le, S. Q.
Lindsay, S.
Long, Q.
MacArthur, D. G.
Montgomery, S. B.
Parts, L.
Stalker, J.
Tyler-Smith, C.
Walter, K.
Zhang, Y.
Gerstein, M. B.
Snyder, M.
Abyzov, A.
Balasubramanian, S.
Bjornson, R.
Du, J.
Grubert, F.
Habegger, L.
Haraksingh, R.
Jee, J.
Khurana, E.
Lam, H. Y. K.
Leng, J.
Mu, X. J.
Urban, A. E.
Zhang, Z.
Li, Y.
Luo, R.
Marth, G. T.
Garrison, E. P.
Kural, D.
Quinlan, A. R.
Stewart, C.
Stromberg, M. P.
Ward, A. N.
Wu, J.
Lee, C.
Mills, R. E.
Shi, X.
McCarroll, S. A.
Banks, E.
DePristo, M. A.
Handsaker, R. E.
Hartl, C.
Korn, J. M.
Li, H.
Nemesh, J. C.
Sebat, J.
Makarov, V.
Ye, K.
Yoon, S. C.
Degenhardt, J.
Kaganovich, M.
Clarke, L.
Smith, R. E.
Zheng-Bradley, X.
Korbel, J. O.
Humphray, S.
Cheetham, R. K.
Eberle, M.
Kahn, S.
Murray, L.
Ye, K.
De La Vega, F. M.
Fu, Y.
Peckham, H. E.
Sun, Y. A.
Batzer, M. A.
Konkel, M. K.
Walker, J. A.
Xiao, C.
Iqbal, Z.
Desany, B.
Blackwell, T.
Snyder, M.
Xing, J.
Eichler, E. E.
Aksay, G.
Alkan, C.
Hajirasouliha, I.
Hormozdiari, F.
Kidd, J. M.
Chen, K.
Chinwalla, A.
Ding, L.
McLellan, M. D.
Wallis, J. W.
Hurles, M. E.
Conrad, D. F.
Walter, K.
Zhang, Y.
Gerstein, M. B.
Snyder, M.
Abyzov, A.
Du, J.
Grubert, F.
Haraksingh, R.
Jee, J.
Khurana, E.
Lam, H. Y. K.
Leng, J.
Mu, X. J.
Urban, A. E.
Zhang, Z.
Gibbs, R. A.
Bainbridge, M.
Challis, D.
Coafra, C.
Dinh, H.
Kovar, C.
Lee, S.
Muzny, D.
Nazareth, L.
Reid, J.
Sabo, A.
Yu, F.
Yu, J.
Marth, G. T.
Garrison, E. P.
Indap, A.
Leong, W. F.
Quinlan, A. R.
Stewart, C.
Ward, A. N.
Wu, J.
Cibulskis, K.
Fennell, T. J.
Gabriel, S. B.
Garimella, K. V.
Hartl, C.
Shefler, E.
Sougnez, C. L.
Wilkinson, J.
Clark, A. G.
Gravel, S.
Grubert, F.
Clarke, L.
Flicek, P.
Smith, R. E.
Zheng-Bradley, X.
Sherry, S. T.
Khouri, H. M.
Paschall, J. E.
Shumway, M. F.
Xiao, C.
McVean, G. A.
Katzman, S. J.
Abecasis, G. R.
Blackwell, T.
Mardis, E. R.
Dooling, D.
Fulton, L.
Fulton, R.
Koboldt, D. C.
Durbin, R. M.
Balasubramaniam, S.
Coffey, A.
Keane, T. M.
MacArthur, D. G.
Palotie, A.
Scott, C.
Stalker, J.
Tyler-Smith, C.
Gerstein, M. B.
Balasubramanian, S.
Chakravarti, A.
Knoppers, B. M.
Abecasis, G. R.
Bustamante, C. D.
Gharani, N.
Gibbs, R. A.
Jorde, L.
Kaye, J. S.
Kent, A.
Li, T.
McGuire, A. L.
McVean, G. A.
Ossorio, P. N.
Rotimi, C. N.
Su, Y.
Toji, L. H.
TylerSmith, C.
Brooks, L. D.
Felsenfeld, A. L.
McEwen, J. E.
Abdallah, A.
Juenger, C. R.
Clemm, N. C.
Collins, F. S.
Duncanson, A.
Green, E. D.
Guyer, M. S.
Peterson, J. L.
Schafer, A. J.
Abecasis, G. R.
Altshuler, D. L.
Auton, A.
Brooks, L. D.
Durbin, R. M.
Gibbs, R. A.
Hurles, M. E.
McVean, G. A.

January 2011

High-throughput sequencing technology enables population-level surveys of human genomic variation. H...

Geographic distribution of derived allele frequencies in a 100

Rasika A. Mathias (134405)
Wenqing Fu (134407)
Joshua M. Akey (77042)
Hannah C. Ainsworth (134410)
Dara G. Torgerson (134413)
Ingo Ruczinski (15765)
Susan Sergeant (134416)
Kathleen C. Barnes (134420)
Floyd H. Chilton (134423)

September 2012

kb region surrounding rs174537 in the 52 populations represented in the Human Genome Diversit...

Ancestral allele frequency of rs3809922 C and rs3809923 C in different populations based on data from the 1000 Genomes Project.

Erli Wang (405970)
Wenfei Jin (197652)
Wenyuan Duan (405972)
Bin Qiao (181287)
Shuna Sun (405971)
Guoying Huang (405973)
Kaihu Shi (454963)
Li Jin (40265)
Hongyan Wang (41596)

September 2013

*The detailed information of these populations can be found at the website: <a href="http://www.1...

Allele frequencies and genotype frequencies of M003-A06 in different human ethnic groups.

Huan-Chieh Chien (130556)
Hurng-Yi Wang (130558)
Yi-Ning Su (130560)
Kuan-Yu Lai (130561)
Li-Chen Lu (130562)
Pau-Chung Chen (130563)
Shih-Feng Tsai (57598)
Chung-I Wu (51710)
Wu-Shiun Hsieh (130568)
Che-Kun James Shen (130569)

October 2012

The frequencies of M003-A06 among different ethnic groups except for the Taiwanese are derived fr...

Genome-wide SNP analysis of human genome

Mao, Huzhang

January 2013

Allelic frequency difference across population can provide valuable insight into population differen...

‘523’ Allele frequencies in non US geographical cohorts (Far Eastern and West Africa).

Colton Linnertz (258148)
Ann M. Saunders (332694)
Michael W. Lutz (332695)
Donna M. Crenshaw (332696)
Iris Grossman (332697)
Daniel K. Burns (332698)
Keith E. Whitfield (332699)
Michael A. Hauser (51606)
Jeanette J. McCarthy (215069)
Megan Ulmer (332700)
Rand Allingham (332701)
Kathleen A. Welsh-Bohmer (258166)
Allen D. Roses (268034)
Ornit Chiba-Falek (258169)

February 2013

Genotypes determination was performed by Polymorphic, Inc. using a sequencing based assay.</p

Frequency of rs12979860 C and T alleles in the diverse ethnic groups present in the 1000 Genomes Project database.

Giuseppe Indolfi (366873)
Giusi Mangone (510305)
Elisa Bartolini (510306)
Gabriella Nebbia (510307)
Pier Luigi Calvo (510308)
Maria Moriondo (366871)
Pier-Angelo Tovo (510309)
Maurizio de Martino (304820)
Chiara Azzari (366867)
Massimo Resti (366881)

January 2014

Frequency of rs12979860 C and T alleles in the diverse ethnic groups present in the 1000 Genomes ...

Frequency of 374F (rs16891982) and the A allele (intronic rs35397) in a) the most pigmented (Dark) and least pigmented (Light) individuals of the skin reflectance distribution from our study and in b) the populations from 1KGP.

Saioa López (610268)
Óscar García (265706)
Iñaki Yurrebaso (610269)
Carlos Flores (4224)
Marialbert Acosta-Herrera (533408)
Hua Chen (43790)
Jesús Gardeazabal (5658757)
Jesús María Careaga (553471)
María Dolores Boyano (553472)
Ana Sánchez (3015789)
Juan Antonio Ratón-Nieto (553470)
Arrate Sevilla (610270)
Isabel Smith-Zubiaga (610271)
Alicia García de Galdeano (610272)
Conrado Martinez-Cadenas (223431)
Neskuts Izagirre (164727)
Concepción de la Rúa (168409)
Santos Alonso (164722)

August 2014

n: number of chromosomes.1North Europe: CEU (Utah residents with Northern and Western Euro...

Allele and genotype frequencies of the CYP19A1 SNPs in various populations.

Athena Starlard-Davenport (688904)
Mohammed S. Orloff (180837)
Ishwori Dhakal (117445)
Rosalind B. Penney (688905)
Susan A. Kadlubar (688906)

February 2015

African Americans; EA: European Americans; CEU: Utah residents with Northern and European ancestr...

Population based allele frequencies of disease associated polymorphisms in the Personalized Medicine Research Project

Stefanski Elisha L
Ivacic Lynn C
Cross Deanna S
McCarty Catherine A

June 2010

Abstract Background There is a lack of knowledge regarding the frequency of disease associated polym...

Genome-wide SNP typing reveals signatures of population history

Hughes, Austin L.
Welch, Robert
Puri, Vinita
Matthews, Casey
Haque, Kashif
Chanock, Stephen J.
Yeager, Meredith

July 2008

AbstractSingle-nucleotide polymorphism (SNP) arrays have become a popular technology for disease-ass...

Ancestry analysis of BAC clones that are the source of the human genome reference sequence across the chromosome 1 locus.

David Reich (27753)
Michael A. Nalls (113680)
W. H. Linda Kao (160779)
Ermeg L. Akylbekova (176947)
Arti Tandon (81924)
Nick Patterson (27751)
James Mullikin (374795)
Wen-Chi Hsueh (264276)
Ching-Yu Cheng (159319)
Josef Coresh (93441)
Eric Boerwinkle (36288)
Man Li (81239)
Alicja Waliszewska (84596)
Julie Neubauer (89815)
Rongling Li (102079)
Tennille S. Leak (156515)
Lynette Ekunwe (223831)
Joe C. Files (374796)
Cheryl L. Hardy (374797)
Joseph M. Zmuda (202160)
Herman A. Taylor (176958)
Elad Ziv (1263)
Tamara B. Harris (110195)
James G. Wilson (113688)

February 2013

The human genome reference sequence across the admixture peak is pieced together from 5 BAC clone...

Large Allele Frequency Differences between Human Continental Groups are more Likely to have Occurred by Drift During range Expansions than by Selection

Hofer, T.
Ray, Nicolas
Wegmann, D.
Excoffier, Laurent Georges Louis

January 2009

Several studies have found strikingly different allele frequencies between continents. This has been...

Allele frequency of rs368234815 - ΔG allele (blue) and TT allele (green) for each population from the 1000 Genomes dataset.

Abstract

Extracted data

Allele frequency of rs368234815 - ΔG allele (blue) and TT allele (green) for each population from the 1000 Genomes dataset.

Abstract

Extracted data

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