Genes differentially expressed by the <i>S. aureus</i> SA564 <i>codY</i> mutant during growth in CDM, AH and VH.

a<p> ORFs were identified by BLAST analysis of Affymetrix array target sequences, as described in the materials and methods. If a corresponding ORF was identified in <i>S. aureus</i> COL, that strain's ORF identifiers were used as default. SACOL####, <i>S. aureus</i> COL (GenBank accession number CP000046.1); SAV####, <i>S. aureus</i> Mu50 (BA000017.4); SA####, <i>S. aureus</i> N315 (BA000018.3); SAOUHSC_####, <i>S. aureus</i> NCTC 8325 (CP000253.1).</p>b<p> Fold change in expression of genes by <i>S. aureus</i> CDM7 as compared to the wild-type strain during growth in the indicated medium; a positive number indicates an up-regulation of the gene by the <i>codY</i> mutant. Standard deviation is shown in parentheses.</p>c<p> At least two differentially expressed probe sets were assigned to these ORFs. Data for all probes sets are shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0110872#pone.0110872.s002" target="_blank">Table S2</a>.</p><p>Genes differentially expressed by the <i>S. aureus</i> SA564 <i>codY</i> mutant during growth in CDM, AH and VH.