Publication date
November 2016
DOIAbstract
This is the first script (of 2) that will generate the OrthoMCL files discussed in the manuscript. See comments for usage, and if script is modified, please provide proper attribution
This is the first script (of 2) that will generate the OrthoMCL files discussed in the manuscript. See comments for usage, and if script is modified, please provide proper attribution
Disclaimer The program OrthoSelect is a beta-test version which is still un-der development. The aut...
Halocaridinides trigonophthalma .bed file containing information for putative ORFs as called by the ...
Halocaridinides trigonophthalma .cds file containing the nucleotide sequences for coding regions of ...
This is the first script (of 2) that will generate the OrthoMCL files discussed in the manuscript. S...
This is the second script (of 2) that will generate the OrthoMCL files described in the manuscript. ...
The ortholog groups (gene families) file is presented as original outputs by the OrthoMCL. Prefix of...
Input data, scoring scripts and expected output for the Orthrus scoring protocol. The stable version...
orthoMCL groups.txt output file used to quantify the rare and common gene families in the E. trachei...
A compressed file containing 25,742 files that describe 12,871 orthologous clusters. Each cluster ha...
Ortholog table for 75 Thioalkalivibrio genomes. Orthlog groups of protein sequences in NCBI-annotate...
Halocaridinides trigonophthalma .pep file containing amino acid sequences for putative ORFs as calle...
Species, 1KITE library IDs (see http://1kite.org/1kite_species.php ), number of assembled transcript...
An ortholog key file (Ortholog_Key_3_20_2014.xlsx) that contains a list of each putative ortholog cl...
Summary: We previously developed OrthoInspector, a package incorporating an original algorithm for t...
Halocaridinides trigonophthalma .gff file containing mapping information for the putative ORFs as ca...
Disclaimer The program OrthoSelect is a beta-test version which is still un-der development. The aut...
Halocaridinides trigonophthalma .bed file containing information for putative ORFs as called by the ...
Halocaridinides trigonophthalma .cds file containing the nucleotide sequences for coding regions of ...
This is the first script (of 2) that will generate the OrthoMCL files discussed in the manuscript. S...
This is the second script (of 2) that will generate the OrthoMCL files described in the manuscript. ...
The ortholog groups (gene families) file is presented as original outputs by the OrthoMCL. Prefix of...
Input data, scoring scripts and expected output for the Orthrus scoring protocol. The stable version...
orthoMCL groups.txt output file used to quantify the rare and common gene families in the E. trachei...
A compressed file containing 25,742 files that describe 12,871 orthologous clusters. Each cluster ha...
Ortholog table for 75 Thioalkalivibrio genomes. Orthlog groups of protein sequences in NCBI-annotate...
Halocaridinides trigonophthalma .pep file containing amino acid sequences for putative ORFs as calle...
Species, 1KITE library IDs (see http://1kite.org/1kite_species.php ), number of assembled transcript...
An ortholog key file (Ortholog_Key_3_20_2014.xlsx) that contains a list of each putative ortholog cl...
Summary: We previously developed OrthoInspector, a package incorporating an original algorithm for t...
Halocaridinides trigonophthalma .gff file containing mapping information for the putative ORFs as ca...
Disclaimer The program OrthoSelect is a beta-test version which is still un-der development. The aut...
Halocaridinides trigonophthalma .bed file containing information for putative ORFs as called by the ...
Halocaridinides trigonophthalma .cds file containing the nucleotide sequences for coding regions of ...
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