Publication date
November 2016
DOIAbstract
This is the second script (of 2) that will generate the OrthoMCL files described in the manuscript. See comments for usage, and if script is modified, please provide proper attribution
This is the second script (of 2) that will generate the OrthoMCL files described in the manuscript. See comments for usage, and if script is modified, please provide proper attribution
Halocaridinides trigonophthalma .bed file containing information for putative ORFs as called by the ...
Halocaridinides trigonophthalma .pep file containing amino acid sequences for putative ORFs as calle...
An ortholog key file (Ortholog_Key_3_20_2014.xlsx) that contains a list of each putative ortholog cl...
This is the second script (of 2) that will generate the OrthoMCL files described in the manuscript. ...
This is the first script (of 2) that will generate the OrthoMCL files discussed in the manuscript. S...
The ortholog groups (gene families) file is presented as original outputs by the OrthoMCL. Prefix of...
Input data, scoring scripts and expected output for the Orthrus scoring protocol. The stable version...
orthoMCL groups.txt output file used to quantify the rare and common gene families in the E. trachei...
Ortholog table for 75 Thioalkalivibrio genomes. Orthlog groups of protein sequences in NCBI-annotate...
Summary: We previously developed OrthoInspector, a package incorporating an original algorithm for t...
Disclaimer The program OrthoSelect is a beta-test version which is still un-der development. The aut...
Species, 1KITE library IDs (see http://1kite.org/1kite_species.php ), number of assembled transcript...
Results of the pipeline on the Orthomam tree with branches hand-picked arbitrarily
A compressed file containing 25,742 files that describe 12,871 orthologous clusters. Each cluster ha...
Halocaridinides trigonophthalma .gff file containing mapping information for the putative ORFs as ca...
Halocaridinides trigonophthalma .bed file containing information for putative ORFs as called by the ...
Halocaridinides trigonophthalma .pep file containing amino acid sequences for putative ORFs as calle...
An ortholog key file (Ortholog_Key_3_20_2014.xlsx) that contains a list of each putative ortholog cl...
This is the second script (of 2) that will generate the OrthoMCL files described in the manuscript. ...
This is the first script (of 2) that will generate the OrthoMCL files discussed in the manuscript. S...
The ortholog groups (gene families) file is presented as original outputs by the OrthoMCL. Prefix of...
Input data, scoring scripts and expected output for the Orthrus scoring protocol. The stable version...
orthoMCL groups.txt output file used to quantify the rare and common gene families in the E. trachei...
Ortholog table for 75 Thioalkalivibrio genomes. Orthlog groups of protein sequences in NCBI-annotate...
Summary: We previously developed OrthoInspector, a package incorporating an original algorithm for t...
Disclaimer The program OrthoSelect is a beta-test version which is still un-der development. The aut...
Species, 1KITE library IDs (see http://1kite.org/1kite_species.php ), number of assembled transcript...
Results of the pipeline on the Orthomam tree with branches hand-picked arbitrarily
A compressed file containing 25,742 files that describe 12,871 orthologous clusters. Each cluster ha...
Halocaridinides trigonophthalma .gff file containing mapping information for the putative ORFs as ca...
Halocaridinides trigonophthalma .bed file containing information for putative ORFs as called by the ...
Halocaridinides trigonophthalma .pep file containing amino acid sequences for putative ORFs as calle...
An ortholog key file (Ortholog_Key_3_20_2014.xlsx) that contains a list of each putative ortholog cl...
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