Dataset used to run analysis with MrBayes. No missing data (e.g., taxa) was present at any locus
Concatenated dataset for three chloroplast markers aligned separately using MUSCLE on the CIPRES por...
Sequence alignments with command blocks for all phylogenetic analyses using MrBayes 3.6.
Concatenated alignments of 351-gene dataset, containing Hemimastigophora, as used in phylogenomic an...
Dataset used to run analysis with MrBayes. No missing data (e.g., taxa) was present at any locus
Dataset used to run analysis with MrBayes. Up to 25% missing data is allowed at each locus
concatenated alignment of loci with complete taxon occupancy (no missing data) in PHYLIP format
These are the alignments of each of the six loci used in the study. These files have been run in MrB...
Dataset for meta-analysis with all information. Subsets of this dataset were used for phylogenetical...
Supplementary File 7. Concatenated alignment of nucleotide sequence data for the final 12-gene 129-t...
All 1554 single gene alignments with all taxa. Data were concatenated and columns with > 50% missin...
Contains nexus alignments for each of the genes of the 10-gene dataset, as well as a concatenated f...
This dataset includes concatenated sequence data of mitochondrial rRNA and cytb, and nuclear rag1, s...
Nexus dataset with the complete alignment (214 taxa and 20 gene fragments; 19461 sites). The alignme...
Concatenated alignment of the complete dataset (1361 loci) and the inferred maximum likelihood RAxML...
Concatenated alignment of the third dataset, including all loci shared by at least 99% of sampled ta...
Concatenated dataset for three chloroplast markers aligned separately using MUSCLE on the CIPRES por...
Sequence alignments with command blocks for all phylogenetic analyses using MrBayes 3.6.
Concatenated alignments of 351-gene dataset, containing Hemimastigophora, as used in phylogenomic an...
Dataset used to run analysis with MrBayes. No missing data (e.g., taxa) was present at any locus
Dataset used to run analysis with MrBayes. Up to 25% missing data is allowed at each locus
concatenated alignment of loci with complete taxon occupancy (no missing data) in PHYLIP format
These are the alignments of each of the six loci used in the study. These files have been run in MrB...
Dataset for meta-analysis with all information. Subsets of this dataset were used for phylogenetical...
Supplementary File 7. Concatenated alignment of nucleotide sequence data for the final 12-gene 129-t...
All 1554 single gene alignments with all taxa. Data were concatenated and columns with > 50% missin...
Contains nexus alignments for each of the genes of the 10-gene dataset, as well as a concatenated f...
This dataset includes concatenated sequence data of mitochondrial rRNA and cytb, and nuclear rag1, s...
Nexus dataset with the complete alignment (214 taxa and 20 gene fragments; 19461 sites). The alignme...
Concatenated alignment of the complete dataset (1361 loci) and the inferred maximum likelihood RAxML...
Concatenated alignment of the third dataset, including all loci shared by at least 99% of sampled ta...
Concatenated dataset for three chloroplast markers aligned separately using MUSCLE on the CIPRES por...
Sequence alignments with command blocks for all phylogenetic analyses using MrBayes 3.6.
Concatenated alignments of 351-gene dataset, containing Hemimastigophora, as used in phylogenomic an...
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