a<p>All positions containing indels in at least one genome sequence were omitted from the analysis. There were a total of 1,128,391 nucleotide positions aligned in the final dataset.</p><p>Calculated nucleotide identity and nucleotide diversity (π ± standard deviation) between Bosnia A strain and individual TPA and TPE strains<sup><a href="http://www.plosntds.org/article/info:doi/10.1371/journal.pntd.0003261#nt108" target="_blank">a</a></sup>.</p
<p>Data consisted of non-centromeric, non-telomeric regions, with putatively admixed regions masked ...
a<p>length of analyzed resequenced region (in kb);</p>b<p>population;</p>c<p>number of segregating s...
Species demarcation in Bacteria and Archaea is mainly based on overall genome relatedness, which ser...
<p>Calculated nucleotide diversity (π ± standard deviation) between TPA and TPE strains, within indi...
<p>Calculated nucleotide diversity (π± standard deviation) between individual TPE strains and the FB...
<p>Calculated nucleotide diversity (π± standard deviation) between FB isolate and individual TPA str...
<p>An unrooted tree was constructed from the complete genome sequences of TPA strains (Nichols, Chic...
<p>Calculated nucleotide diversities (π ± standard deviation) between individual TPA strains and the...
a<p>Outlier sequences were not removed prior to these analyses.</p>b<p>The mean % amino acid identit...
<p>Each estimate of Watterson’s theta per basepair (θw/bp) and nucleotide diversity with Juke’s Cant...
<p>(A) The average absolute dinucleotide relative abundance difference (δ*-value) for the composite ...
<p>(A) Genes are illustrated in the genomic gene order. Arrowheads below the graph indicate their re...
<p>Abbreviations are number of isolates examined (N), segregating sites (S), number of haplotypes (H...
A<p>Haplotypes identify unique strains.</p>B<p>Nucleotide diversity as the average proportion of nuc...
<p>Ss: Number of segregating sites, S: number of singleton sites, Ps: number of parsimony-informativ...
<p>Data consisted of non-centromeric, non-telomeric regions, with putatively admixed regions masked ...
a<p>length of analyzed resequenced region (in kb);</p>b<p>population;</p>c<p>number of segregating s...
Species demarcation in Bacteria and Archaea is mainly based on overall genome relatedness, which ser...
<p>Calculated nucleotide diversity (π ± standard deviation) between TPA and TPE strains, within indi...
<p>Calculated nucleotide diversity (π± standard deviation) between individual TPE strains and the FB...
<p>Calculated nucleotide diversity (π± standard deviation) between FB isolate and individual TPA str...
<p>An unrooted tree was constructed from the complete genome sequences of TPA strains (Nichols, Chic...
<p>Calculated nucleotide diversities (π ± standard deviation) between individual TPA strains and the...
a<p>Outlier sequences were not removed prior to these analyses.</p>b<p>The mean % amino acid identit...
<p>Each estimate of Watterson’s theta per basepair (θw/bp) and nucleotide diversity with Juke’s Cant...
<p>(A) The average absolute dinucleotide relative abundance difference (δ*-value) for the composite ...
<p>(A) Genes are illustrated in the genomic gene order. Arrowheads below the graph indicate their re...
<p>Abbreviations are number of isolates examined (N), segregating sites (S), number of haplotypes (H...
A<p>Haplotypes identify unique strains.</p>B<p>Nucleotide diversity as the average proportion of nuc...
<p>Ss: Number of segregating sites, S: number of singleton sites, Ps: number of parsimony-informativ...
<p>Data consisted of non-centromeric, non-telomeric regions, with putatively admixed regions masked ...
a<p>length of analyzed resequenced region (in kb);</p>b<p>population;</p>c<p>number of segregating s...
Species demarcation in Bacteria and Archaea is mainly based on overall genome relatedness, which ser...