<p>Variants are divided by type across the rows. Missed variants are those that were annotated in the curation, but were not identified by Pilon. The called variants are those that were annotated in the curation that Pilon accurately identified.</p><p>Pilon's performance in calling variants in <i>M. tuberculosis</i> F11 that were larger than 50 nt.</p
The population structure of 3,776 Mycobacterium tuberculosis isolates was determined using variable-...
a<p>Description of 55 shared-types (SITs; n = 198 isolates): 49/55 SITs containing 187 isolates matc...
<p>R = resistant, S = susceptible, RIF = Rifampicin, INH = Isoniazid</p><p>Site 2: slide n = 49 (1 s...
<p>The three rows marked with 'Single' indicate single nucleotide variants. The three rows marked wi...
<p>False negative calls are the number of unique events from the curation set that was missed by eac...
<p>Frequency and patterns of resistance conferring mutations in <i>M</i>. <i>tuberculosis</i> isolat...
<p>Mutations identified in <i>M</i>. <i>tuberculosis</i> genome and their frequency.</p
Molecular techniques such as IS6110-RFLP typing and spacer oligonucleotide typing (spoligotyping) ha...
<p>Results for all INH-resistant strains are grouped, as well as the results for are wildtype strain...
a<p>The percentage in this study as compared to the SITVIT2 database was calculated by dividing the ...
<p>* A total of 39/40 SITs containing 85 isolates matched a preexisting shared-type in the database,...
<p><i>Strains are identified by the name given by either the RIVM (numerical codes) or the KIT (lett...
BACKGROUND: Molecular typing is a valuable tool for gaining insight into spread of Mycobacterium tub...
Abstract: Following a huge global effort, the first World Health Organization (WHO)-endorsed catalog...
The present study was designed to evaluate the use of variable number tandem repeat (VNTR) and IS611...
The population structure of 3,776 Mycobacterium tuberculosis isolates was determined using variable-...
a<p>Description of 55 shared-types (SITs; n = 198 isolates): 49/55 SITs containing 187 isolates matc...
<p>R = resistant, S = susceptible, RIF = Rifampicin, INH = Isoniazid</p><p>Site 2: slide n = 49 (1 s...
<p>The three rows marked with 'Single' indicate single nucleotide variants. The three rows marked wi...
<p>False negative calls are the number of unique events from the curation set that was missed by eac...
<p>Frequency and patterns of resistance conferring mutations in <i>M</i>. <i>tuberculosis</i> isolat...
<p>Mutations identified in <i>M</i>. <i>tuberculosis</i> genome and their frequency.</p
Molecular techniques such as IS6110-RFLP typing and spacer oligonucleotide typing (spoligotyping) ha...
<p>Results for all INH-resistant strains are grouped, as well as the results for are wildtype strain...
a<p>The percentage in this study as compared to the SITVIT2 database was calculated by dividing the ...
<p>* A total of 39/40 SITs containing 85 isolates matched a preexisting shared-type in the database,...
<p><i>Strains are identified by the name given by either the RIVM (numerical codes) or the KIT (lett...
BACKGROUND: Molecular typing is a valuable tool for gaining insight into spread of Mycobacterium tub...
Abstract: Following a huge global effort, the first World Health Organization (WHO)-endorsed catalog...
The present study was designed to evaluate the use of variable number tandem repeat (VNTR) and IS611...
The population structure of 3,776 Mycobacterium tuberculosis isolates was determined using variable-...
a<p>Description of 55 shared-types (SITs; n = 198 isolates): 49/55 SITs containing 187 isolates matc...
<p>R = resistant, S = susceptible, RIF = Rifampicin, INH = Isoniazid</p><p>Site 2: slide n = 49 (1 s...