RAllPops_D_Gst_MtDNA_PenningsJEB2011

This is R code to calculate Jost D and Gst and the associated p-values (using a permutation test) for MtDNA sequences. There are two versions. The first one (RPairw_D_MtDna_Penningsjeb2011.r) calculates pairwise values (between all pairs of populations in your data) and the second one (RAllPops_D_MtDNA_PenningsJEB2011.r) calculates one global value