<p>The SNP ID, genomic position (based on NCBI Build 37), minor allele frequency (MAF), and the <i>p</i>-value (uncorrected for multiple testing) for the allelic association with the combined toxicity measure are shown. The annotation indicates the location of the SNP (intron, 5′ or 3′ UTR), and the amino acid residue altered by the SNP (because of alternative <i>ABCB5</i> transcripts, more than one location is indicated for some SNPs). All <i>p</i>-values < 0.05 are in bold. To account for multiple testing a permutation test was performed for each SNP, and the <i>p</i>-value is shown in a separate column. Of note, rs17143212 is a missense SNP (Thr131ILE) that it is the only SNP with a significant <i>p</i>-value in the permutation test. Thi...
<p>The SNPs and genes are ordered by chromosomal position (x-axis). The associations are displayed a...
a<p>: The Fisher's exact test was used for SNP with a Minor Allele Frequency (MAF)<0.10.</p>b<p>: Pe...
*<p>Numbers included after quality control of genotyping data.</p><p><i>Abbreviations</i>: <b>CHR</b...
<p>Odds ratios (OR) and 95% confidence intervals (CI) are relative to the allele on the forward stra...
a<p>MAF: Minor Allele Frequency of reference population is listed;</p>b<p>Association tests abbrevia...
<p>Association results for variants showing the smallest <i>P</i>-values (top SNPs) in 31 regions su...
Genetic association results (p values) for pair-wise SNPs interactions (allelic model).</p
<p>NSNP; Number of SNPs in this haplotype.</p><p>NHAP; Number of common haplotypes (f>0.01).</p><p>S...
<p>*Flanking;</p>#<p>the distance of the SNP to gene;</p>&<p>the LD (r<sup>2</sup>) of each SNP with...
<p>(A) Association result for αT in a panel of 513 lines using 48,962 SNPs, showing the physical map...
<p><b>Note:</b> MAF, minor allele frequency. UTR, untranslated region;</p>a<p>Odds ratio followed by...
<p>A total of 66 SNPs were genotyped in the linked region on chromosome 16 and subsequently analyzed...
*<p>Corrected <i>P-</i>values at the experiment-wise or chromosome-wise level are indicated for the ...
<p>MAF: minor allele frequency, HWE: Hardy Weinberg Equilibrium test p-value, T: number of minor all...
<p>SNPs written in bold are significant after correcting for multiple testing.</p
<p>The SNPs and genes are ordered by chromosomal position (x-axis). The associations are displayed a...
a<p>: The Fisher's exact test was used for SNP with a Minor Allele Frequency (MAF)<0.10.</p>b<p>: Pe...
*<p>Numbers included after quality control of genotyping data.</p><p><i>Abbreviations</i>: <b>CHR</b...
<p>Odds ratios (OR) and 95% confidence intervals (CI) are relative to the allele on the forward stra...
a<p>MAF: Minor Allele Frequency of reference population is listed;</p>b<p>Association tests abbrevia...
<p>Association results for variants showing the smallest <i>P</i>-values (top SNPs) in 31 regions su...
Genetic association results (p values) for pair-wise SNPs interactions (allelic model).</p
<p>NSNP; Number of SNPs in this haplotype.</p><p>NHAP; Number of common haplotypes (f>0.01).</p><p>S...
<p>*Flanking;</p>#<p>the distance of the SNP to gene;</p>&<p>the LD (r<sup>2</sup>) of each SNP with...
<p>(A) Association result for αT in a panel of 513 lines using 48,962 SNPs, showing the physical map...
<p><b>Note:</b> MAF, minor allele frequency. UTR, untranslated region;</p>a<p>Odds ratio followed by...
<p>A total of 66 SNPs were genotyped in the linked region on chromosome 16 and subsequently analyzed...
*<p>Corrected <i>P-</i>values at the experiment-wise or chromosome-wise level are indicated for the ...
<p>MAF: minor allele frequency, HWE: Hardy Weinberg Equilibrium test p-value, T: number of minor all...
<p>SNPs written in bold are significant after correcting for multiple testing.</p
<p>The SNPs and genes are ordered by chromosomal position (x-axis). The associations are displayed a...
a<p>: The Fisher's exact test was used for SNP with a Minor Allele Frequency (MAF)<0.10.</p>b<p>: Pe...
*<p>Numbers included after quality control of genotyping data.</p><p><i>Abbreviations</i>: <b>CHR</b...