Phylogenetic trees were constructed for nine species from the rice tribe using different methods, and two Bayesian trees are shown for the whole genome sequence and the insertion-deletion data.

<p>A. The whole genome sequence data were used with four different methods, Bayesian inference (BI), maximum parsimony (MP), maximum likelihood (ML) and neighbor-joining (NJ). Numbers above the branches are the posterior probabilities for BI and bootstrap values of MP, ML and NJ, respectively. B. The coding data from insertions and deletions (indels) were used with three different methods, Bayesian inference (BI) and maximum parsimony (MP), and two neighbor-joining (NJ) methods, for two different sets of coded data. Numbers above the branches are the posterior probabilities for BI and bootstrap values of MP and NJ. Branch length is proportional to the number of substitutions, as indicated by the scale bar. Stars represent the different positions for <i>O. australiensis</i> (GU592340) in the two trees.