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Data Protection

Validation of variants within <i>ILDR1</i> using Sanger sequencing.

Nayoung K. D. Kim (691097)
Tomohito Higashi (621727)
Kyoung Yeul Lee (691098)
Ah Reum Kim (449120)
Shin-ichiro Kitajiri (691099)
Min Young Kim (313098)
Mun Young Chang (691100)
Veronica Kim (691101)
Seung-Ha Oh (449124)
Dongsup Kim (50568)
Mikio Furuse (621728)
Woong-Yang Park (207980)
Byung Yoon Choi (407079)

Publication date

February 2015

DOI

10.1371/journal.pone.0116931.g004

Abstract

<p>(A) Sanger sequencing trace of p.P69H within <i>ILDR1</i> from SNUH23. (B) Conservation of the p.P69 residue among orthologs and paralogs of ILDR1.</p

Extracted data

Related items

Verification of mutations from training cohort by Sanger sequencing.

Stephan Bartels (776607)
Elisa Schipper (121546)
Hans Heinrich Kreipe (776608)
Ulrich Lehmann (121565)

July 2015

<p>(A) Mapped reads of Patient 10 loaded in the IGV browser (Version 2.3.34). <i>CBL</i> p.T377A (c....

Results of targeted Sanger sequencing and genetic analyses of 13 IRD families.

Maleeha Maria (702850)
Muhammad Ajmal (581123)
Maleeha Azam (581128)
Nadia Khalida Waheed (702851)
Sorath Noorani Siddiqui (702852)
Bilal Mustafa (702853)
Humaira Ayub (581121)
Liaqat Ali (641438)
Shakeel Ahmad (702854)
Shazia Micheal (614394)
Alamdar Hussain (323649)
Syed Tahir Abbas Shah (702855)
Syeda Hafiza Benish Ali (662780)
Waqas Ahmed (3213993)
Yar Muhammad Khan (702856)
Anneke I. den Hollander (142854)
Lonneke Haer-Wigman (702857)
Rob W. J. Collin (142848)
Muhammad Imran Khan (614396)
Raheel Qamar (348807)
Frans P. M. Cremers (142851)

March 2015

<p>Hz, Homozygous; Mb, Megabases; SS, Sanger sequencing entire gene; TSS, targeted Sanger sequencing...

Sanger sequencing of the Mp3g19030.1 gene in Mp<i>thar</i> mutants and amino acid alignment of RTN4IP1 homologues.

Chloe Casey (14341756)
Thomas Köcher (14341759)
Clément Champion (14341762)
Katharina Jandrasits (14341765)
Magdalena Mosiolek (5713628)
Clémence Bonnot (14341768)
Liam Dolan (270514)

January 2023

(A, B, and C) Regions of the Mp3g19030.1 gene in Mpthar2 (A), Mpthar4 (B), and Mpthar6 (C) were Sang...

Sanger validation of candidates.

Michael V. Zaragoza (243350)
Lianna Fung (2793496)
Ember Jensen (2793511)
Frances Oh (2793502)
Katherine Cung (2793505)
Linda A. McCarthy (2793514)
Christine K. Tran (2793493)
Van Hoang (2793499)
Simin A. Hakim (2793508)
Anna Grosberg (229256)

May 2016

<p>Of the filtered 41 candidates, 21 variants were confirmed by Sanger sequencing. Two examples are ...

Sanger validation of final modifier gene candidate variants.

Luigi Donato (6105473)
Simona Alibrandi (12980559)
Concetta Scimone (766649)
Carmela Rinaldi (7041578)
Angela Dascola (14241694)
Alessandro Calamuneri (10046942)
Rosalia D’Angelo (6105479)
Antonina Sidoti (6105482)

December 2022

All nine final selected variants carried by candidate modifier genes were validated by Sanger sequen...

Sanger sequencing validation of the N309K variant.

Michael Wilschanski (637555)
Montaser Abbasi (637556)
Elias Blanco (637557)
Iris Lindberg (264694)
Michael Yourshaw (286582)
David Zangen (637558)
Itai Berger (637559)
Eyal Shteyer (637560)
Orit Pappo (265608)
Benjamin Bar-Oz (637561)
Martin G. Martín (5660869)
Orly Elpeleg (324361)

October 2014

<p>Sanger sequencing of the results for the proband, parent and unaffected control at nucleotide pos...

Sanger sequencing validation of variants in the Simons Simplex Collection.

Donald Freed (3122163)
Jonathan Pevsner (15767)

September 2016

<p>Sanger sequencing validation of variants in the Simons Simplex Collection.</p

Validation of candidate mutations by PCR-Sanger sequencing.

Byung Yoon Choi (407079)
Gibeom Park (407073)
Jungsoo Gim (449119)
Ah Reum Kim (449120)
Bong-Jik Kim (449121)
Hyo-Sang Kim (449122)
Joo Hyun Park (449123)
Taesung Park (4438)
Seung-Ha Oh (449124)
Kyu-Hee Han (407074)
Woong-Yang Park (207980)

August 2013

<p>Candidate mutations in 9 autosomal dominant and 4 autosomal recessive NSHL families were shown in...

Primers used in Sanger sequencing for validation of identified HaloPlex/NGS variants in the <i>GNAI3</i> gene.

Alejandra Young (344759)
Uma Dandekar (3110109)
Calvin Pan (22416)
Avery Sader (3110106)
Jie J. Zheng (275441)
Richard A. Lewis (535635)
Debora B. Farber (115130)

September 2016

<p>Primers used in Sanger sequencing for validation of identified HaloPlex/NGS variants in the <i>GN...

Typical results in genotyping ALDH2 by pyrosequencing and Sanger sequencing.

Lina Zhang (112887)
Jinzhao Zhao (428335)
Guanglin Cui (62503)
Hong Wang (13528)
Dao Wen Wang (112500)

March 2015

<p>A. Three genotypes of rs671 presented different peaks by pyrosequencing. B. Genotyping results we...

Sanger sequencing of selected X-linked genes.

Mingyan Lin (139065)
Anastasia Hrabovsky (139067)
Erika Pedrosa (139072)
Tao Wang (12008)
Deyou Zheng (7943)
Herbert M. Lachman (139079)

August 2012

<p>Top panel in each strip is sequence of genomic DNA (gDNA) for iPSC-1, a control subject, confirmi...

Sanger confirmation of editing candidates.

Ernesto Picardi (23902)
Angela Gallo (139000)
Federica Galeano (139004)
Sara Tomaselli (139009)
Graziano Pesole (5577)

September 2012

<p>RNA editing events identified within coding regions of candidate genes from SRP002274 study were ...

Validation rate of SNPs based on the Sanger sequence analysis of a random set of 767 SNP loci.

Qijian Song (277210)
David L. Hyten (277211)
Gaofeng Jia (277212)
Charles V. Quigley (277213)
Edward W. Fickus (277214)
Randall L. Nelson (277215)
Perry B. Cregan (277216)

January 2013

<p>Validation rate of SNPs based on the Sanger sequence analysis of a random set of 767 SNP loci.</p

MSCSA and Sanger sequencing of 70 pH1N1 virus specimens.

Jairo Gooskens (546538)
Jessika C. Zevenhoven-Dobbe (546539)
Eric C. Claas (546540)
Aloys C. M. Kroes (546541)
Clara C. Posthuma (546542)

April 2014

$<p>Sanger sequencing was succesful in 63 of 65 specimens determined by MSCSA.</p>#<p>Sequence match...

Verification of mutations from validation cohort by Sanger sequencing.

Stephan Bartels (776607)
Elisa Schipper (121546)
Hans Heinrich Kreipe (776608)
Ulrich Lehmann (121565)

July 2015

<p>(A) Mapped reads of a Patient with RCMD loaded in the IGV browser (Version 2.3.34). <i>TET2</i> p...

Verification of mutations from training cohort by Sanger sequencing.

Stephan Bartels (776607)
Elisa Schipper (121546)
Hans Heinrich Kreipe (776608)
Ulrich Lehmann (121565)

July 2015

<p>(A) Mapped reads of Patient 10 loaded in the IGV browser (Version 2.3.34). <i>CBL</i> p.T377A (c....

Results of targeted Sanger sequencing and genetic analyses of 13 IRD families.

Maleeha Maria (702850)
Muhammad Ajmal (581123)
Maleeha Azam (581128)
Nadia Khalida Waheed (702851)
Sorath Noorani Siddiqui (702852)
Bilal Mustafa (702853)
Humaira Ayub (581121)
Liaqat Ali (641438)
Shakeel Ahmad (702854)
Shazia Micheal (614394)
Alamdar Hussain (323649)
Syed Tahir Abbas Shah (702855)
Syeda Hafiza Benish Ali (662780)
Waqas Ahmed (3213993)
Yar Muhammad Khan (702856)
Anneke I. den Hollander (142854)
Lonneke Haer-Wigman (702857)
Rob W. J. Collin (142848)
Muhammad Imran Khan (614396)
Raheel Qamar (348807)
Frans P. M. Cremers (142851)

March 2015

<p>Hz, Homozygous; Mb, Megabases; SS, Sanger sequencing entire gene; TSS, targeted Sanger sequencing...

Sanger sequencing of the Mp3g19030.1 gene in Mp<i>thar</i> mutants and amino acid alignment of RTN4IP1 homologues.

Chloe Casey (14341756)
Thomas Köcher (14341759)
Clément Champion (14341762)
Katharina Jandrasits (14341765)
Magdalena Mosiolek (5713628)
Clémence Bonnot (14341768)
Liam Dolan (270514)

January 2023

(A, B, and C) Regions of the Mp3g19030.1 gene in Mpthar2 (A), Mpthar4 (B), and Mpthar6 (C) were Sang...

Sanger validation of candidates.

Michael V. Zaragoza (243350)
Lianna Fung (2793496)
Ember Jensen (2793511)
Frances Oh (2793502)
Katherine Cung (2793505)
Linda A. McCarthy (2793514)
Christine K. Tran (2793493)
Van Hoang (2793499)
Simin A. Hakim (2793508)
Anna Grosberg (229256)

May 2016

<p>Of the filtered 41 candidates, 21 variants were confirmed by Sanger sequencing. Two examples are ...

Sanger validation of final modifier gene candidate variants.

Luigi Donato (6105473)
Simona Alibrandi (12980559)
Concetta Scimone (766649)
Carmela Rinaldi (7041578)
Angela Dascola (14241694)
Alessandro Calamuneri (10046942)
Rosalia D’Angelo (6105479)
Antonina Sidoti (6105482)

December 2022

All nine final selected variants carried by candidate modifier genes were validated by Sanger sequen...

Sanger sequencing validation of the N309K variant.

Michael Wilschanski (637555)
Montaser Abbasi (637556)
Elias Blanco (637557)
Iris Lindberg (264694)
Michael Yourshaw (286582)
David Zangen (637558)
Itai Berger (637559)
Eyal Shteyer (637560)
Orit Pappo (265608)
Benjamin Bar-Oz (637561)
Martin G. Martín (5660869)
Orly Elpeleg (324361)

October 2014

<p>Sanger sequencing of the results for the proband, parent and unaffected control at nucleotide pos...

Sanger sequencing validation of variants in the Simons Simplex Collection.

Donald Freed (3122163)
Jonathan Pevsner (15767)

September 2016

<p>Sanger sequencing validation of variants in the Simons Simplex Collection.</p

Validation of candidate mutations by PCR-Sanger sequencing.

Byung Yoon Choi (407079)
Gibeom Park (407073)
Jungsoo Gim (449119)
Ah Reum Kim (449120)
Bong-Jik Kim (449121)
Hyo-Sang Kim (449122)
Joo Hyun Park (449123)
Taesung Park (4438)
Seung-Ha Oh (449124)
Kyu-Hee Han (407074)
Woong-Yang Park (207980)

August 2013

<p>Candidate mutations in 9 autosomal dominant and 4 autosomal recessive NSHL families were shown in...

Primers used in Sanger sequencing for validation of identified HaloPlex/NGS variants in the <i>GNAI3</i> gene.

Alejandra Young (344759)
Uma Dandekar (3110109)
Calvin Pan (22416)
Avery Sader (3110106)
Jie J. Zheng (275441)
Richard A. Lewis (535635)
Debora B. Farber (115130)

September 2016

<p>Primers used in Sanger sequencing for validation of identified HaloPlex/NGS variants in the <i>GN...

Typical results in genotyping ALDH2 by pyrosequencing and Sanger sequencing.

Lina Zhang (112887)
Jinzhao Zhao (428335)
Guanglin Cui (62503)
Hong Wang (13528)
Dao Wen Wang (112500)

March 2015

<p>A. Three genotypes of rs671 presented different peaks by pyrosequencing. B. Genotyping results we...

Sanger sequencing of selected X-linked genes.

Mingyan Lin (139065)
Anastasia Hrabovsky (139067)
Erika Pedrosa (139072)
Tao Wang (12008)
Deyou Zheng (7943)
Herbert M. Lachman (139079)

August 2012

<p>Top panel in each strip is sequence of genomic DNA (gDNA) for iPSC-1, a control subject, confirmi...

Sanger confirmation of editing candidates.

Ernesto Picardi (23902)
Angela Gallo (139000)
Federica Galeano (139004)
Sara Tomaselli (139009)
Graziano Pesole (5577)

September 2012

<p>RNA editing events identified within coding regions of candidate genes from SRP002274 study were ...

Validation rate of SNPs based on the Sanger sequence analysis of a random set of 767 SNP loci.

Qijian Song (277210)
David L. Hyten (277211)
Gaofeng Jia (277212)
Charles V. Quigley (277213)
Edward W. Fickus (277214)
Randall L. Nelson (277215)
Perry B. Cregan (277216)

January 2013

<p>Validation rate of SNPs based on the Sanger sequence analysis of a random set of 767 SNP loci.</p

MSCSA and Sanger sequencing of 70 pH1N1 virus specimens.

Jairo Gooskens (546538)
Jessika C. Zevenhoven-Dobbe (546539)
Eric C. Claas (546540)
Aloys C. M. Kroes (546541)
Clara C. Posthuma (546542)

April 2014

$<p>Sanger sequencing was succesful in 63 of 65 specimens determined by MSCSA.</p>#<p>Sequence match...

Verification of mutations from validation cohort by Sanger sequencing.

Stephan Bartels (776607)
Elisa Schipper (121546)
Hans Heinrich Kreipe (776608)
Ulrich Lehmann (121565)

July 2015

<p>(A) Mapped reads of a Patient with RCMD loaded in the IGV browser (Version 2.3.34). <i>TET2</i> p...

Verification of mutations from training cohort by Sanger sequencing.

Stephan Bartels (776607)
Elisa Schipper (121546)
Hans Heinrich Kreipe (776608)
Ulrich Lehmann (121565)

July 2015

<p>(A) Mapped reads of Patient 10 loaded in the IGV browser (Version 2.3.34). <i>CBL</i> p.T377A (c....

Results of targeted Sanger sequencing and genetic analyses of 13 IRD families.

Maleeha Maria (702850)
Muhammad Ajmal (581123)
Maleeha Azam (581128)
Nadia Khalida Waheed (702851)
Sorath Noorani Siddiqui (702852)
Bilal Mustafa (702853)
Humaira Ayub (581121)
Liaqat Ali (641438)
Shakeel Ahmad (702854)
Shazia Micheal (614394)
Alamdar Hussain (323649)
Syed Tahir Abbas Shah (702855)
Syeda Hafiza Benish Ali (662780)
Waqas Ahmed (3213993)
Yar Muhammad Khan (702856)
Anneke I. den Hollander (142854)
Lonneke Haer-Wigman (702857)
Rob W. J. Collin (142848)
Muhammad Imran Khan (614396)
Raheel Qamar (348807)
Frans P. M. Cremers (142851)

March 2015

<p>Hz, Homozygous; Mb, Megabases; SS, Sanger sequencing entire gene; TSS, targeted Sanger sequencing...

Sanger sequencing of the Mp3g19030.1 gene in Mp<i>thar</i> mutants and amino acid alignment of RTN4IP1 homologues.

Chloe Casey (14341756)
Thomas Köcher (14341759)
Clément Champion (14341762)
Katharina Jandrasits (14341765)
Magdalena Mosiolek (5713628)
Clémence Bonnot (14341768)
Liam Dolan (270514)

January 2023

(A, B, and C) Regions of the Mp3g19030.1 gene in Mpthar2 (A), Mpthar4 (B), and Mpthar6 (C) were Sang...