<p>OTU designations are followed (in parenthesis) by the number of sequences represented by that OTU in each environment. These designations are presented in the following order: Pools, Control, UVmin, UVplus, 40C, and Fluct. The S_ab score represents the percentage of shared 7-mers between two sequences, which does not require alignment in the calculation. Abbreviations: M is the mesocosm experiment; Y is Yellowstone (USA). <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0119741#pone.0119741.s006" target="_blank">S1 Table</a> provides the list of all OTUs.</p><p>Taxonomic assignment of the most abundant bacterial OTUs (at 97% cut-off) from the microbial mats at the end of the experiment using the Ribosomal Database Pr...
BackgroundThe operational taxonomic unit (OTU) is widely used in microbial ecology. Reproducibility ...
File Piper_bacterialOTU_taxonomy This file summarizes the taxonomy of bacterial OTUs observed in thi...
<p>The Lowest common ancestor algorithm was used to classify OTU sequences with blastN against the S...
<p>Families and OTUs are ranked in descending order of mean relative abundance among all subjects. B...
<p>In parentheses are bootstrap confidence of each assignment. Each of these OTUs was the most domin...
<p>(A) Venn diagram showing the number of OTUs unique to a single subsample or shared by two, three,...
Taxonomic assignments of OTUs (binned at 97% 16S rRNA gene sequence identity), generated by comparin...
<p>Upper panel: OTU counts at various levels of 16S rRNA similarity; the dashed line and the dotted ...
<p>Only OTUs constituting more than 10% of at least one sample are shown. The text in parentheses af...
<p>‘Others’ contain OTUs with a relative abundance below 0.5% in the entire data set. ‘Unidentified’...
<p>An OTU represents a cluster of sequences with 97% similarity in the sequence of the 18S rRNA V4 r...
Taxonomic assignments of OTUs (binned at 99% 16S rRNA gene sequence identity), generated by comparin...
The 100 OTUs that had the highest global average relative abundances in the 172 samples. Samples typ...
The demarcation of operational taxonomic units (OTUs) from complex sequence data sets is a key step ...
<p><sup>a</sup>Low abundance OTUs (less than 0.1% of bacterial sequences), and OTUs not assignable t...
BackgroundThe operational taxonomic unit (OTU) is widely used in microbial ecology. Reproducibility ...
File Piper_bacterialOTU_taxonomy This file summarizes the taxonomy of bacterial OTUs observed in thi...
<p>The Lowest common ancestor algorithm was used to classify OTU sequences with blastN against the S...
<p>Families and OTUs are ranked in descending order of mean relative abundance among all subjects. B...
<p>In parentheses are bootstrap confidence of each assignment. Each of these OTUs was the most domin...
<p>(A) Venn diagram showing the number of OTUs unique to a single subsample or shared by two, three,...
Taxonomic assignments of OTUs (binned at 97% 16S rRNA gene sequence identity), generated by comparin...
<p>Upper panel: OTU counts at various levels of 16S rRNA similarity; the dashed line and the dotted ...
<p>Only OTUs constituting more than 10% of at least one sample are shown. The text in parentheses af...
<p>‘Others’ contain OTUs with a relative abundance below 0.5% in the entire data set. ‘Unidentified’...
<p>An OTU represents a cluster of sequences with 97% similarity in the sequence of the 18S rRNA V4 r...
Taxonomic assignments of OTUs (binned at 99% 16S rRNA gene sequence identity), generated by comparin...
The 100 OTUs that had the highest global average relative abundances in the 172 samples. Samples typ...
The demarcation of operational taxonomic units (OTUs) from complex sequence data sets is a key step ...
<p><sup>a</sup>Low abundance OTUs (less than 0.1% of bacterial sequences), and OTUs not assignable t...
BackgroundThe operational taxonomic unit (OTU) is widely used in microbial ecology. Reproducibility ...
File Piper_bacterialOTU_taxonomy This file summarizes the taxonomy of bacterial OTUs observed in thi...
<p>The Lowest common ancestor algorithm was used to classify OTU sequences with blastN against the S...