<p>Parameter values are means from the analysis of 10 simulated data sets generated using a model with three generations of random mating between subpopulations that had intermediate (<i>F</i><sub>ST</sub> ~ 0.5) or maximum allele frequency differences between them. Standard errors are in parentheses.The significance of differences between the observed and simulated results were tested using a one sample <i>t</i>-test.</p><p>Summary of the simulation results.</p
<p>Simulation Results: Parameter estimates resulting from simulation for the model with and without ...
<p>Simulation results at significance level with different methods for phenotypic data generated fr...
<p>Note: <sup>a</sup> denote the proportions of YRI individuals in cases-controls, respectively.</p>...
<p>Bar heights are the mean allele counts averaged over 10 simulations, and error bars denote one st...
<p>The figure plots the mean (A) genotype error and (B) clone frequency error as a function of the...
<p>Bar heights are the mean allele counts averaged over 10 simulations, and error bars denote one st...
<p>The average over 200 simulation runs is reported for the number of detected associations (Size), ...
<p>The true positive rate (TPR, row 1), false discovery rate (FDR, row 2) and false positive rate (F...
These data are the average percent of real loci and the average number of spurious loci detected giv...
1<p>The column “Method” is the same as described for <a href="http://www.plosone.org/article/info:do...
<p>Scenarios differed in training data size, number of chromosomes, number of QTL, and whether the g...
<p>Black solid line: relationship between the number of sampled females (X axis) and the diversity o...
<p>Data set: The name of the data set; Markers/chr: Number of markers simulated on each chromosome; ...
<p>Simulated parameters in all simulated experiments (3 alleles for marker and QTL, and 3 chromosome...
<p>For all five parameter combinations, we use <i>c</i> = 10<sup>−11</sup>. Most simulations reach e...
<p>Simulation Results: Parameter estimates resulting from simulation for the model with and without ...
<p>Simulation results at significance level with different methods for phenotypic data generated fr...
<p>Note: <sup>a</sup> denote the proportions of YRI individuals in cases-controls, respectively.</p>...
<p>Bar heights are the mean allele counts averaged over 10 simulations, and error bars denote one st...
<p>The figure plots the mean (A) genotype error and (B) clone frequency error as a function of the...
<p>Bar heights are the mean allele counts averaged over 10 simulations, and error bars denote one st...
<p>The average over 200 simulation runs is reported for the number of detected associations (Size), ...
<p>The true positive rate (TPR, row 1), false discovery rate (FDR, row 2) and false positive rate (F...
These data are the average percent of real loci and the average number of spurious loci detected giv...
1<p>The column “Method” is the same as described for <a href="http://www.plosone.org/article/info:do...
<p>Scenarios differed in training data size, number of chromosomes, number of QTL, and whether the g...
<p>Black solid line: relationship between the number of sampled females (X axis) and the diversity o...
<p>Data set: The name of the data set; Markers/chr: Number of markers simulated on each chromosome; ...
<p>Simulated parameters in all simulated experiments (3 alleles for marker and QTL, and 3 chromosome...
<p>For all five parameter combinations, we use <i>c</i> = 10<sup>−11</sup>. Most simulations reach e...
<p>Simulation Results: Parameter estimates resulting from simulation for the model with and without ...
<p>Simulation results at significance level with different methods for phenotypic data generated fr...
<p>Note: <sup>a</sup> denote the proportions of YRI individuals in cases-controls, respectively.</p>...