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Study schema outlining the major steps in the experimental design and miRNA analysis.

Ali H. Zaidi (479356)
Lindsey T. Saldin (715440)
Lori A. Kelly (479366)
Linda Bergal (715441)
Ricardo Londono (715442)
Juliann E. Kosovec (479357)
Yoshihiro Komatsu (479359)
Pashtoon M. Kasi (479358)
Amit A. Shetty (715443)
Timothy J. Keane (715444)
Shyam J. Thakkar (715445)
Luai Huleihel (109113)
Rodney J. Landreneau (112622)
Stephen F. Badylak (715446)
Blair A. Jobe (479368)

Publication date

March 2015

DOI

10.1371/journal.pone.0122375.g001

Abstract

<p>Study schema outlining the major steps in the experimental design and miRNA analysis.</p

Extracted data

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Experimental work flow showing the steps carried out and bioinformatic utilities used for a transcriptome analysis.

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Francisco Amil-Ruiz (441299)
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Experimental work flow showing the steps carried out and bioinformatic utilities used for a transcri...

Schematic drawing of the experimental approach (see main text for further details).

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May 2012

<p>Schematic drawing of the experimental approach (see main text for further details).</p

Pathway analysis of the predicted miRNAs using DAVID Bioinformatics software.

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Ding Xia (134355)
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<p>Pathway analysis of the predicted miRNAs using DAVID Bioinformatics software.</p

The workflow of experimental approaches adopted for miRNA and mRNA expression analysis.

Dragan Milenkovic (188858)
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January 2012

<p>The workflow of experimental approaches adopted for miRNA and mRNA expression analysis.</p

Diagram of experimental design and analytical flow for mRNA and miRNA data.

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<p>Diagram of experimental design and analytical flow for mRNA and miRNA data.</p

Experimental design and schematic diagram of the workflow used in this study.

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<p>Experimental design and schematic diagram of the workflow used in this study.</p

Schematic representation of the miRNA analysis in rice embryos at the early stages of seed germination.

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<p>Schematic of sample processing and subsequent proteomic and data analysis pipeline.</p

Schematic representation of the steps employed in our data mining strategy and the number of genes selected after each step.

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Maria P. H. Koster (224563)
Wendy Rodenburg (44995)
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February 2013

<p>Schematic representation of the steps employed in our data mining strategy and the number of gene...

Schematic for the study design of our eDNA capture optimization experiment.

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Schematic overview of the procedure involved in identification and cluster analysis.

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<p>Schematic overview of the procedure involved in identification and cluster analysis.</p

Schematic depiction of the main theory strands which contributed to the study design.

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Lorenz Fischer (50736)
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<p>Schematic depiction of the main theory strands which contributed to the study design.</p

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Summary of miRNAs and their targets predicted from in silico analyses based on TCGA database.

Marilesia Ferreira de Souza (4436596)
Hellen Kuasne (3994676)
Mateus de Camargo Barros-Filho (4436593)
Heloísa Lizotti Cilião (4436599)
Fabio Albuquerque Marchi (4436584)
Paulo Emilio Fuganti (4436602)
Alexandre Rossi Paschoal (4436590)
Silvia Regina Rogatto (384893)
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September 2017

<p>Summary of miRNAs and their targets predicted from in silico analyses based on TCGA database.</p

Experimental design.

Sun Pan (526895)
Duojiao Wu (150646)
Andrew E. Teschendorff (184707)
Tao Hong (179228)
Linyan Wang (526896)
Mengjia Qian (526897)
Chunsheng Wang (312621)
Xiangdong Wang (1542742)

February 2014

<p>The flowchart schematizes the experimental steps of the statistical analysis of microarray data.<...

Experimental work flow showing the steps carried out and bioinformatic utilities used for a transcriptome analysis.

Victor M. Guerrero-Sanchez (6236651)
Ana M. Maldonado-Alconada (5501393)
Francisco Amil-Ruiz (441299)
Andrea Verardi (6236654)
Jesús V. Jorrín-Novo (5573480)
María-Dolores Rey (638379)

January 2019

Experimental work flow showing the steps carried out and bioinformatic utilities used for a transcri...

Schematic drawing of the experimental approach (see main text for further details).

Siddharth Nanguneri (162273)
Benjamin Flottmann (162278)
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May 2012

<p>Schematic drawing of the experimental approach (see main text for further details).</p

Pathway analysis of the predicted miRNAs using DAVID Bioinformatics software.

Bohan Wang (147618)
Bolin Wu (450169)
Jun Liu (42548)
Weimin Yao (147593)
Ding Xia (134355)
Lu Li (14069)
Zhiqiang Chen (218692)
Zhangqun Ye (147631)
Xiao Yu (139738)

July 2014

<p>Pathway analysis of the predicted miRNAs using DAVID Bioinformatics software.</p

The workflow of experimental approaches adopted for miRNA and mRNA expression analysis.

Dragan Milenkovic (188858)
Christiane Deval (25566)
Erwan Gouranton (188859)
Jean-François Landrier (188860)
Augustin Scalbert (188861)
Christine Morand (188862)
Andrzej Mazur (188863)

January 2012

<p>The workflow of experimental approaches adopted for miRNA and mRNA expression analysis.</p

Diagram of experimental design and analytical flow for mRNA and miRNA data.

J. Christopher States (21407)
Amar V. Singh (157870)
Thomas B. Knudsen (157871)
Eric C. Rouchka (157872)
Ntube O. Ngalame (157873)
Gavin E. Arteel (157874)
Yulan Piao (2375)
Minoru S. H. Ko (157877)

June 2012

<p>Diagram of experimental design and analytical flow for mRNA and miRNA data.</p

Experimental design and schematic diagram of the workflow used in this study.

Xinhong Luan (665190)
Zhongzan Cao (665191)
Zhe Xing (1821481)
Mei Liu (41760)
Ming Gao (115719)
Bo Meng (111065)
Ruiming Fan (4459006)

September 2017

<p>Experimental design and schematic diagram of the workflow used in this study.</p

Schematic representation of the miRNA analysis in rice embryos at the early stages of seed germination.

Dongli He (382997)
Qiong Wang (117288)
Kun Wang (134525)
Pingfang Yang (134532)

December 2015

<p>Schematic representation of the miRNA analysis in rice embryos at the early stages of seed germin...

Schematic of sample processing and subsequent proteomic and data analysis pipeline.

Esther N. Pesciotta (508912)
Sira Sriswasdi (42545)
Hsin-Yao Tang (395357)
David W. Speicher (395361)
Philip J. Mason (508913)
Monica Bessler (508914)

January 2014

<p>Schematic of sample processing and subsequent proteomic and data analysis pipeline.</p

Schematic representation of the steps employed in our data mining strategy and the number of genes selected after each step.

Jeroen L. A. Pennings (224558)
Maria P. H. Koster (224563)
Wendy Rodenburg (44995)
Peter C. J. I. Schielen (224573)
Annemieke de Vries (224578)

February 2013

<p>Schematic representation of the steps employed in our data mining strategy and the number of gene...

Schematic for the study design of our eDNA capture optimization experiment.

Kelly E. Williams (4232869)
Kathryn P. Huyvaert (382461)
Antoinette J. Piaggio (115667)

July 2017

<p>Schematic for the study design of our eDNA capture optimization experiment.</p

Schematic overview of the procedure involved in identification and cluster analysis.

Jie Wang (16762)
Na Zhou (123019)
Bin Xu (10691)
Huaijie Hao (123023)
Lin Kang (46742)
Yuling Zheng (123026)
Yongqiang Jiang (123029)
Hua Jiang (123031)

November 2012

<p>Schematic overview of the procedure involved in identification and cluster analysis.</p

Schematic depiction of the main theory strands which contributed to the study design.

Svenja Caspers (310632)
Stefan Heim (310634)
Marc G. Lucas (310636)
Egon Stephan (310639)
Lorenz Fischer (50736)
Katrin Amunts (148185)
Karl Zilles (148182)

February 2013

<p>Schematic depiction of the main theory strands which contributed to the study design.</p

Lois W. Choi-Kain (17598836)
Grace E. Murray (11144004)
Julia Jurist (17598839)
Boyu Ren (4801725)
Laura Germine (3325089)

December 2023

In the Study Schema, “A” corresponds to Baseline, “B” to Time 2, “C” to Time 3, and “D” to Follow-up...

Summary of miRNAs and their targets predicted from in silico analyses based on TCGA database.

Marilesia Ferreira de Souza (4436596)
Hellen Kuasne (3994676)
Mateus de Camargo Barros-Filho (4436593)
Heloísa Lizotti Cilião (4436599)
Fabio Albuquerque Marchi (4436584)
Paulo Emilio Fuganti (4436602)
Alexandre Rossi Paschoal (4436590)
Silvia Regina Rogatto (384893)
Ilce Mara de Syllos Cólus (4436587)

September 2017

<p>Summary of miRNAs and their targets predicted from in silico analyses based on TCGA database.</p

Experimental design.

Sun Pan (526895)
Duojiao Wu (150646)
Andrew E. Teschendorff (184707)
Tao Hong (179228)
Linyan Wang (526896)
Mengjia Qian (526897)
Chunsheng Wang (312621)
Xiangdong Wang (1542742)

February 2014

<p>The flowchart schematizes the experimental steps of the statistical analysis of microarray data.<...

Experimental work flow showing the steps carried out and bioinformatic utilities used for a transcriptome analysis.

Victor M. Guerrero-Sanchez (6236651)
Ana M. Maldonado-Alconada (5501393)
Francisco Amil-Ruiz (441299)
Andrea Verardi (6236654)
Jesús V. Jorrín-Novo (5573480)
María-Dolores Rey (638379)

January 2019

Experimental work flow showing the steps carried out and bioinformatic utilities used for a transcri...

Schematic drawing of the experimental approach (see main text for further details).

Siddharth Nanguneri (162273)
Benjamin Flottmann (162278)
Heinz Horstmann (58)
Mike Heilemann (162287)
Thomas Kuner (162293)

May 2012

<p>Schematic drawing of the experimental approach (see main text for further details).</p

Pathway analysis of the predicted miRNAs using DAVID Bioinformatics software.

Bohan Wang (147618)
Bolin Wu (450169)
Jun Liu (42548)
Weimin Yao (147593)
Ding Xia (134355)
Lu Li (14069)
Zhiqiang Chen (218692)
Zhangqun Ye (147631)
Xiao Yu (139738)

July 2014

<p>Pathway analysis of the predicted miRNAs using DAVID Bioinformatics software.</p