The SNPs composition output chart of three HA sequences from three IFV subpopulations.

Summary of SNPs, Alleles, Haplotypes, and gene diversity inferred from RARseq data.

Magdy S. Alabady (779618)
Willie L. Rogers (779619)
Russell L. Malmberg (217042)

August 2015

Summary of SNPs, Alleles, Haplotypes, and gene diversity inferred from RARseq data.</p

Proportions of putative protein coding sequence groups encoded by the segment 6 genomic strand RNAs of influenza A viruses among different serotypes.

Chu-Wen Yang (159589)
Mei-Fang Chen (295478)

January 2016

Blue arrows indicate open reading frames encoded by segment 6 positive sense RNAs of influenza A ...

Proportions of putative protein coding sequence groups encoded by the segment 3 genomic strand RNAs of influenza A viruses among different serotypes.

Chu-Wen Yang (159589)
Mei-Fang Chen (295478)

January 2016

Blue arrows indicate open reading frames encoded by segment 3 positive sense RNAs of influenza A ...

Comparison of SNPs from three different IFV subpopulations.

Unitsa Sangket (721240)
Sukanya Vijasika (721241)
Hasnee Noh (721242)
Wasun Chantratita (721243)
Chonticha Klungthong (287990)
In Kyu Yoon (721244)
Stefan Fernandez (146590)
Wiriya Rutvisuttinunt (327680)

April 2015

Area A contains universal SNPs. Areas B, C and D consist of likely common SNPs. Areas E, F and G ...

The allelic list of the universal SNPs found in HA fragment (“AF1_HA_vs_AF2_HA_vs_AF3_HA_sim_all.csv”).

Unitsa Sangket (721240)
Sukanya Vijasika (721241)
Hasnee Noh (721242)
Wasun Chantratita (721243)
Chonticha Klungthong (287990)
In Kyu Yoon (721244)
Stefan Fernandez (146590)
Wiriya Rutvisuttinunt (327680)

April 2015

Twelve universal SNPs detected among three subpopulations in HA fragment are A405G, G413A, A482G,...

Detected SNPs in HA gene fragment from sample #VIROAF1 (“AF1_HA.csv”).

Unitsa Sangket (721240)
Sukanya Vijasika (721241)
Hasnee Noh (721242)
Wasun Chantratita (721243)
Chonticha Klungthong (287990)
In Kyu Yoon (721244)
Stefan Fernandez (146590)
Wiriya Rutvisuttinunt (327680)

April 2015

Each line describes the SNPs at each position in the HA gene fragment of VIROAF1. For instance, p...

Number of SNPs after each stage of pseudo-testcross (Pt) marker identification for four F1 families.

Katie E. Hyma (752977)
Paola Barba (780291)
Minghui Wang (15418)
Jason P. Londo (202254)
Charlotte B. Acharya (780292)
Sharon E. Mitchell (222162)
Qi Sun (127)
Bruce Reisch (482391)
Lance Cadle-Davidson (780293)

August 2015

Number of SNPs after each stage of pseudo-testcross (Pt) marker identification for four F1</...

Composition of the virulence profile (VP) clusters by source (rows) and cluster assignments of the genomes (columns).

Bradd J. Haley (10114951)
Serajus Salaheen (10114945)
Seon Woo Kim (3190833)
Jo Ann Van Kessel (9589871)

January 2024

The first number represents the number of genomes from each source assigned to that cluster, the fir...

Summary of four SNPs (identified by sequence alignment) with their position, variation, frequency and count.

Vandana Jaiswal (754875)
Vijay Gahlaut (754876)
Saloni Mathur (754877)
Priyanka Agarwal (754878)
Manoj Kumar Khandelwal (754879)
Jitendra Paul Khurana (754880)
Akhilesh Kumar Tyagi (754881)
Harindra Singh Balyan (754882)
Pushpendra Kumar Gupta (754883)

June 2015

Summary of four SNPs (identified by sequence alignment) with their position, variation, frequency...

Results from the haplotype association analyses (p<0.10).

Leena Kovanen (250757)
Mari Kaunisto (443248)
Kati Donner (443249)
Sirkku T. Saarikoski (250759)
Timo Partonen (250765)

August 2013

NSNP; Number of SNPs in this haplotype.NHAP; Number of common haplotypes (f>0.01).S...

STRUCTURE analysis of the proportion of each isolate’s SNP profile attributed to each of the different clusters (198.1 and 198.2).

Bradd J. Haley (546446)
Seon Woo Kim (3190833)
James Pettengill (29001)
Yan Luo (255674)
Jeffrey S. Karns (3190830)
Jo Ann S. Van Kessel (3190827)

October 2016

STRUCTURE analysis of the proportion of each isolate’s SNP profile attributed to each of the diff...

Number of SNPs at each stage of correlation based chromosome assignment for four F1 families analyzed with the synteny pipeline.

Katie E. Hyma (752977)
Paola Barba (780291)
Minghui Wang (15418)
Jason P. Londo (202254)
Charlotte B. Acharya (780292)
Sharon E. Mitchell (222162)
Qi Sun (127)
Bruce Reisch (482391)
Lance Cadle-Davidson (780293)

August 2015

Number of SNPs at each stage of correlation based chromosome assignment for four F1 fa...

Frequencies of the haplotypes comprising the five SNPs of the FXN 3′-UTR.

Simonetta Bandiera (217675)
François Cartault (286186)
Anne-Sophie Jannot (286187)
Elie Hatem (286188)
Muriel Girard (217678)
Laila Rifai (286189)
Clemence Loiseau (286190)
Arnold Munnich (115628)
Stanislas Lyonnet (186137)
Alexandra Henrion-Caude (217686)

February 2013

Frequencies of the haplotypes comprising the five SNPs of the FXN 3′-UTR.</p

Plots of SNP frequency versus chromosomal position in pooled (bulk) segregant analysis.

Benjamin Offei (5537873)
Stephanie Braun-Galleani (4028279)
Anjan Venkatesh (11184090)
William T. Casey (14265489)
Kevin E. O’Connor (5697374)
Kevin P. Byrne (14186221)
Kenneth H. Wolfe (8728713)

December 2022

(A) Pp2 allele frequencies in Cross 1. Dot plots show the location and estimated allele frequencies,...

Proportions of putative protein coding sequence groups encoded by the segment 4 genomic strand RNAs of influenza A viruses among different serotypes.

Chu-Wen Yang (159589)
Mei-Fang Chen (295478)

January 2016

Blue arrows indicate open reading frames encoded by segment 4 positive sense RNAs of influenza A ...

Summary of SNPs, Alleles, Haplotypes, and gene diversity inferred from RARseq data.

Magdy S. Alabady (779618)
Willie L. Rogers (779619)
Russell L. Malmberg (217042)

August 2015

Summary of SNPs, Alleles, Haplotypes, and gene diversity inferred from RARseq data.</p

Proportions of putative protein coding sequence groups encoded by the segment 6 genomic strand RNAs of influenza A viruses among different serotypes.

Chu-Wen Yang (159589)
Mei-Fang Chen (295478)

January 2016

Blue arrows indicate open reading frames encoded by segment 6 positive sense RNAs of influenza A ...

Proportions of putative protein coding sequence groups encoded by the segment 3 genomic strand RNAs of influenza A viruses among different serotypes.

Chu-Wen Yang (159589)
Mei-Fang Chen (295478)

January 2016

Blue arrows indicate open reading frames encoded by segment 3 positive sense RNAs of influenza A ...

Comparison of SNPs from three different IFV subpopulations.

Unitsa Sangket (721240)
Sukanya Vijasika (721241)
Hasnee Noh (721242)
Wasun Chantratita (721243)
Chonticha Klungthong (287990)
In Kyu Yoon (721244)
Stefan Fernandez (146590)
Wiriya Rutvisuttinunt (327680)

April 2015

Area A contains universal SNPs. Areas B, C and D consist of likely common SNPs. Areas E, F and G ...

The allelic list of the universal SNPs found in HA fragment (“AF1_HA_vs_AF2_HA_vs_AF3_HA_sim_all.csv”).

Unitsa Sangket (721240)
Sukanya Vijasika (721241)
Hasnee Noh (721242)
Wasun Chantratita (721243)
Chonticha Klungthong (287990)
In Kyu Yoon (721244)
Stefan Fernandez (146590)
Wiriya Rutvisuttinunt (327680)

April 2015

Twelve universal SNPs detected among three subpopulations in HA fragment are A405G, G413A, A482G,...

Detected SNPs in HA gene fragment from sample #VIROAF1 (“AF1_HA.csv”).

Unitsa Sangket (721240)
Sukanya Vijasika (721241)
Hasnee Noh (721242)
Wasun Chantratita (721243)
Chonticha Klungthong (287990)
In Kyu Yoon (721244)
Stefan Fernandez (146590)
Wiriya Rutvisuttinunt (327680)

April 2015

Each line describes the SNPs at each position in the HA gene fragment of VIROAF1. For instance, p...

Number of SNPs after each stage of pseudo-testcross (Pt) marker identification for four F1 families.

Katie E. Hyma (752977)
Paola Barba (780291)
Minghui Wang (15418)
Jason P. Londo (202254)
Charlotte B. Acharya (780292)
Sharon E. Mitchell (222162)
Qi Sun (127)
Bruce Reisch (482391)
Lance Cadle-Davidson (780293)

August 2015

Number of SNPs after each stage of pseudo-testcross (Pt) marker identification for four F1</...

Composition of the virulence profile (VP) clusters by source (rows) and cluster assignments of the genomes (columns).

Bradd J. Haley (10114951)
Serajus Salaheen (10114945)
Seon Woo Kim (3190833)
Jo Ann Van Kessel (9589871)

January 2024

The first number represents the number of genomes from each source assigned to that cluster, the fir...

Summary of four SNPs (identified by sequence alignment) with their position, variation, frequency and count.

Vandana Jaiswal (754875)
Vijay Gahlaut (754876)
Saloni Mathur (754877)
Priyanka Agarwal (754878)
Manoj Kumar Khandelwal (754879)
Jitendra Paul Khurana (754880)
Akhilesh Kumar Tyagi (754881)
Harindra Singh Balyan (754882)
Pushpendra Kumar Gupta (754883)

June 2015

Summary of four SNPs (identified by sequence alignment) with their position, variation, frequency...

Results from the haplotype association analyses (p<0.10).

Leena Kovanen (250757)
Mari Kaunisto (443248)
Kati Donner (443249)
Sirkku T. Saarikoski (250759)
Timo Partonen (250765)

August 2013

NSNP; Number of SNPs in this haplotype.NHAP; Number of common haplotypes (f>0.01).S...

STRUCTURE analysis of the proportion of each isolate’s SNP profile attributed to each of the different clusters (198.1 and 198.2).

Bradd J. Haley (546446)
Seon Woo Kim (3190833)
James Pettengill (29001)
Yan Luo (255674)
Jeffrey S. Karns (3190830)
Jo Ann S. Van Kessel (3190827)

October 2016

STRUCTURE analysis of the proportion of each isolate’s SNP profile attributed to each of the diff...

Number of SNPs at each stage of correlation based chromosome assignment for four F1 families analyzed with the synteny pipeline.

Katie E. Hyma (752977)
Paola Barba (780291)
Minghui Wang (15418)
Jason P. Londo (202254)
Charlotte B. Acharya (780292)
Sharon E. Mitchell (222162)
Qi Sun (127)
Bruce Reisch (482391)
Lance Cadle-Davidson (780293)

August 2015

Number of SNPs at each stage of correlation based chromosome assignment for four F1 fa...

Frequencies of the haplotypes comprising the five SNPs of the FXN 3′-UTR.

Simonetta Bandiera (217675)
François Cartault (286186)
Anne-Sophie Jannot (286187)
Elie Hatem (286188)
Muriel Girard (217678)
Laila Rifai (286189)
Clemence Loiseau (286190)
Arnold Munnich (115628)
Stanislas Lyonnet (186137)
Alexandra Henrion-Caude (217686)

February 2013

Frequencies of the haplotypes comprising the five SNPs of the FXN 3′-UTR.</p

Plots of SNP frequency versus chromosomal position in pooled (bulk) segregant analysis.

Benjamin Offei (5537873)
Stephanie Braun-Galleani (4028279)
Anjan Venkatesh (11184090)
William T. Casey (14265489)
Kevin E. O’Connor (5697374)
Kevin P. Byrne (14186221)
Kenneth H. Wolfe (8728713)

December 2022

(A) Pp2 allele frequencies in Cross 1. Dot plots show the location and estimated allele frequencies,...

Proportions of putative protein coding sequence groups encoded by the segment 4 genomic strand RNAs of influenza A viruses among different serotypes.

Chu-Wen Yang (159589)
Mei-Fang Chen (295478)

January 2016

Blue arrows indicate open reading frames encoded by segment 4 positive sense RNAs of influenza A ...

Summary of SNPs, Alleles, Haplotypes, and gene diversity inferred from RARseq data.

Magdy S. Alabady (779618)
Willie L. Rogers (779619)
Russell L. Malmberg (217042)

August 2015

Summary of SNPs, Alleles, Haplotypes, and gene diversity inferred from RARseq data.</p

Proportions of putative protein coding sequence groups encoded by the segment 6 genomic strand RNAs of influenza A viruses among different serotypes.

Chu-Wen Yang (159589)
Mei-Fang Chen (295478)

January 2016

Blue arrows indicate open reading frames encoded by segment 6 positive sense RNAs of influenza A ...

Proportions of putative protein coding sequence groups encoded by the segment 3 genomic strand RNAs of influenza A viruses among different serotypes.

Chu-Wen Yang (159589)
Mei-Fang Chen (295478)

January 2016

Blue arrows indicate open reading frames encoded by segment 3 positive sense RNAs of influenza A ...

The SNPs composition output chart of three HA sequences from three IFV subpopulations.

Abstract

Extracted data

The SNPs composition output chart of three HA sequences from three IFV subpopulations.

Abstract

Extracted data

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