<p>WT is shown as a blue triangle and mutant I155A as a red diamond. (A) <i>T</i><sub>m</sub> calculated from simulation RMSD, for short (2,000,000-step) and long (20,000,000-step) simulations. Simulation <i>T</i><sub>m</sub> is clearly smaller for long simulations, in which the protein has more time to unfold. (B) Relative <i>T</i><sub>m</sub> normalized to WT, for short and long simulations. Remarkably, the points fall nearly on the line y = x, with a correlation of 0.86, with one distinct outlier I155A.</p
(A, B) Cross-correlation (Pearson correlation) of RMSD values of each domain for wild type and D170A...
<p>(left) Plot of the relationship: mutants included in the best correlation are represented with cl...
<p>(a–b). Root-mean-square deviations (RMSD) of the backbone atoms for two independent MD simulation...
<p>(A) Plot of simulated <i>T</i><sub>m</sub> vs. experimental <i>T</i><sub>m</sub>. The relative <i...
<p>(A) Correlation between simulated <i>T</i><sub>m</sub> and experimental <i>T</i><sub>m</sub>, ave...
<p>(A) Scatter plot of <i>T</i><sub>m</sub> (RMSD) vs. <i>T</i><sub>m</sub> (Total energy), with <i>...
<p><b>(A)</b> The root mean square deviations (RMSDs) from the initial coordinates computed on the C...
<p>Simulations of total variability resulting from different random correlation matrices selected f...
<p>Proteins Cα (A), heavy atoms of NADPH cofactor (B) and substrate cortisone (C) are plotted as fun...
<p>Each coloured line in (A) and (C) represents the distribution of the fraction of simulation time ...
<p>A) The evolution of the RMSD (Root Mean Square Deviation) of WT-g14-3-3 (in red) and Pho-g14-3-3 ...
<p>A : Average atomic fluctuations in the simulations with MLG (red), EEE (green) and without substr...
Predicting crystallographic B-factors of a protein from a conventional molecular dynamics simulation...
<p>Comparison of wt and 116G PrP via MD simulations. (<b>a</b>) Cartoon representation of wild type ...
<p>The average RMSF of the mutated residues for 10 ns are plotted in 2D bar graph. The bars in gray ...
(A, B) Cross-correlation (Pearson correlation) of RMSD values of each domain for wild type and D170A...
<p>(left) Plot of the relationship: mutants included in the best correlation are represented with cl...
<p>(a–b). Root-mean-square deviations (RMSD) of the backbone atoms for two independent MD simulation...
<p>(A) Plot of simulated <i>T</i><sub>m</sub> vs. experimental <i>T</i><sub>m</sub>. The relative <i...
<p>(A) Correlation between simulated <i>T</i><sub>m</sub> and experimental <i>T</i><sub>m</sub>, ave...
<p>(A) Scatter plot of <i>T</i><sub>m</sub> (RMSD) vs. <i>T</i><sub>m</sub> (Total energy), with <i>...
<p><b>(A)</b> The root mean square deviations (RMSDs) from the initial coordinates computed on the C...
<p>Simulations of total variability resulting from different random correlation matrices selected f...
<p>Proteins Cα (A), heavy atoms of NADPH cofactor (B) and substrate cortisone (C) are plotted as fun...
<p>Each coloured line in (A) and (C) represents the distribution of the fraction of simulation time ...
<p>A) The evolution of the RMSD (Root Mean Square Deviation) of WT-g14-3-3 (in red) and Pho-g14-3-3 ...
<p>A : Average atomic fluctuations in the simulations with MLG (red), EEE (green) and without substr...
Predicting crystallographic B-factors of a protein from a conventional molecular dynamics simulation...
<p>Comparison of wt and 116G PrP via MD simulations. (<b>a</b>) Cartoon representation of wild type ...
<p>The average RMSF of the mutated residues for 10 ns are plotted in 2D bar graph. The bars in gray ...
(A, B) Cross-correlation (Pearson correlation) of RMSD values of each domain for wild type and D170A...
<p>(left) Plot of the relationship: mutants included in the best correlation are represented with cl...
<p>(a–b). Root-mean-square deviations (RMSD) of the backbone atoms for two independent MD simulation...