IMa2.Input.FILES

IMa2

Andreas S. Chavez (3318294)

November 2016

IMa2 file used for analyses of isolation with migration. Data includes DNA sequences from 15 nuclear...

Sequences and comparisons of duck mitochondrial DNA control regions

Liu, HT

[[abstract]]In this study, the nucleotide sequences of the displacement loop (D-loop) and the riboso...

Phylogenetic Analysis of Duck Species from Tegal Indonesia Using 18S Ribosomal RNA and Mitochondrial COI Gene

Kusumaningrum, Hermin Pancasakti
Haryanti, Wahyu Dewi Utari
Rahayu, Annisa Rizki

January 2018

Background and Objective: Tegal duck is a domestic waterfowl species known as a major producer of eg...

IMa2.Input.FILES

Lavretsky, Philip
Engilis Jr., Andrew
Eadie, John M.
Peters, Jeffrey L.

April 2015

IMa2 input files consisting of 19 nuclear markers filtered for the largest non-recombinant fragment ...

STRUCTURE.Input.FILES

Philip Lavretsky (3246990)
Andrew Engilis Jr. (3276324)
John M. Eadie (769293)
Jeffrey L. Peters (182801)

November 2016

Input files for STRUCTURE runs. Three files include analyses between 15 Hawaiian duck, 21 Laysan duc...

MALLvMEDU.IM

Lavretsky, Philip
DaCosta, Jeffrey M.
Hernández-Baños, Blanca E.
Engilis Jr, Andrew
Sorenson, Michael D.
Peters, Jeffrey L.

September 2015

Run-ready IM input file with 1 mitochondrial and 17 nuclear introns (geometric mean of locus length ...

Data from: Mito-nuclear discord in six congeneric lineages of Holarctic ducks (genus Anas)

Peters, Jeffrey L.
Winker, Kevin
Millam, Kendra C.
Lavretsky, Philip
Kulikova, Irina
Wilson, Robert E.
Zhuravlev, Yuri N.
McCracken, Kevin G.

Many species have Holarctic distributions that extend across Europe, Asia, and North America. Most g...

PHASED.FASTA.FILES

Philip Lavretsky (3246990)
Andrew Engilis Jr. (3276324)
John M. Eadie (769293)
Jeffrey L. Peters (182801)

November 2016

Fasta files include the mitochondrial control region and 19 phased nuclear loci for 15 Hawaiian duck...

SplitsTree.Input.FILE

Philip Lavretsky (3246990)
Andrew Engilis Jr. (3276324)
John M. Eadie (769293)
Jeffrey L. Peters (182801)

November 2016

Fasta file of 19 nuclear loci concatenated for a total of 6,682 aligned nucleotides for 15 Hawaiian...

MITOCHONDRIAL GENE TREES AND THE EVOLUTIONARY RELATIONSHIP OF MALLARD AND BLACK DUCKS

Avise, John C
Ankney, C Davison
Nelson, William S

July 1990

We assayed restriction site differences in mitochondrial DNA (mtDNA) within and among allopatric pop...

Data from: Genetic admixture supports an ancient hybrid origin of the endangered Hawaiian duck

Lavretsky, Philip
Engilis Jr., Andrew
Eadie, John M.
Peters, Jeffrey L.

April 2015

Speciation is regarded primarily as a bifurcation from an ancestral species into two distinct taxono...

Data from: Behavioral vs. molecular sources of conflict between nuclear and mitochondrial DNA: the role of male-biased dispersal in a Holarctic sea duck

Peters, Jeffrey L.
Bolender, Kimberly A.
Pearce, John M.

April 2012

Genetic studies of waterfowl (Anatidae) have observed the full spectrum of mitochondrial (mt) DNA po...

Is homoplasy or lineage sorting the source of incongruent mtDNA and nuclear gene trees in the stiff-tailed ducks (Nomonyx–Oxyura)? Systematic Biology

Kevin G. Mccracken
Michael
D. Sorenson

January 2005

Abstract.—We evaluated the potential effects of homoplasy, ancestral polymorphism, and hybridization...

lu

January 2004

Species-level DNA phylogenies frequently suVer from two shortcomings—gene trees usually are construc...

Data from: Speciation genomics and a role for the Z chromosome in the early stages of divergence between Mexican ducks and mallards

Lavretsky, Philip
DaCosta, Jeffrey M.
Hernández-Baños, Blanca E.
Engilis Jr, Andrew
Sorenson, Michael D.
Peters, Jeffrey L.

September 2015

Speciation is a continuous and dynamic process, and studying organisms during the early stages of th...

IMa2

Andreas S. Chavez (3318294)

November 2016

IMa2 file used for analyses of isolation with migration. Data includes DNA sequences from 15 nuclear...

Sequences and comparisons of duck mitochondrial DNA control regions

Liu, HT

[[abstract]]In this study, the nucleotide sequences of the displacement loop (D-loop) and the riboso...

Phylogenetic Analysis of Duck Species from Tegal Indonesia Using 18S Ribosomal RNA and Mitochondrial COI Gene

Kusumaningrum, Hermin Pancasakti
Haryanti, Wahyu Dewi Utari
Rahayu, Annisa Rizki

January 2018

Background and Objective: Tegal duck is a domestic waterfowl species known as a major producer of eg...

IMa2.Input.FILES

Lavretsky, Philip
Engilis Jr., Andrew
Eadie, John M.
Peters, Jeffrey L.

April 2015

IMa2 input files consisting of 19 nuclear markers filtered for the largest non-recombinant fragment ...

STRUCTURE.Input.FILES

Philip Lavretsky (3246990)
Andrew Engilis Jr. (3276324)
John M. Eadie (769293)
Jeffrey L. Peters (182801)

November 2016

Input files for STRUCTURE runs. Three files include analyses between 15 Hawaiian duck, 21 Laysan duc...

MALLvMEDU.IM

Lavretsky, Philip
DaCosta, Jeffrey M.
Hernández-Baños, Blanca E.
Engilis Jr, Andrew
Sorenson, Michael D.
Peters, Jeffrey L.

September 2015

Run-ready IM input file with 1 mitochondrial and 17 nuclear introns (geometric mean of locus length ...

Data from: Mito-nuclear discord in six congeneric lineages of Holarctic ducks (genus Anas)

Peters, Jeffrey L.
Winker, Kevin
Millam, Kendra C.
Lavretsky, Philip
Kulikova, Irina
Wilson, Robert E.
Zhuravlev, Yuri N.
McCracken, Kevin G.

Many species have Holarctic distributions that extend across Europe, Asia, and North America. Most g...

PHASED.FASTA.FILES

Philip Lavretsky (3246990)
Andrew Engilis Jr. (3276324)
John M. Eadie (769293)
Jeffrey L. Peters (182801)

November 2016

Fasta files include the mitochondrial control region and 19 phased nuclear loci for 15 Hawaiian duck...

SplitsTree.Input.FILE

Philip Lavretsky (3246990)
Andrew Engilis Jr. (3276324)
John M. Eadie (769293)
Jeffrey L. Peters (182801)

November 2016

Fasta file of 19 nuclear loci concatenated for a total of 6,682 aligned nucleotides for 15 Hawaiian...

MITOCHONDRIAL GENE TREES AND THE EVOLUTIONARY RELATIONSHIP OF MALLARD AND BLACK DUCKS

Avise, John C
Ankney, C Davison
Nelson, William S

July 1990

We assayed restriction site differences in mitochondrial DNA (mtDNA) within and among allopatric pop...

Data from: Genetic admixture supports an ancient hybrid origin of the endangered Hawaiian duck

Lavretsky, Philip
Engilis Jr., Andrew
Eadie, John M.
Peters, Jeffrey L.

April 2015

Speciation is regarded primarily as a bifurcation from an ancestral species into two distinct taxono...

Data from: Behavioral vs. molecular sources of conflict between nuclear and mitochondrial DNA: the role of male-biased dispersal in a Holarctic sea duck

Peters, Jeffrey L.
Bolender, Kimberly A.
Pearce, John M.

April 2012

Genetic studies of waterfowl (Anatidae) have observed the full spectrum of mitochondrial (mt) DNA po...

Is homoplasy or lineage sorting the source of incongruent mtDNA and nuclear gene trees in the stiff-tailed ducks (Nomonyx–Oxyura)? Systematic Biology

Kevin G. Mccracken
Michael
D. Sorenson

January 2005

Abstract.—We evaluated the potential effects of homoplasy, ancestral polymorphism, and hybridization...

lu

January 2004

Species-level DNA phylogenies frequently suVer from two shortcomings—gene trees usually are construc...

Data from: Speciation genomics and a role for the Z chromosome in the early stages of divergence between Mexican ducks and mallards

Lavretsky, Philip
DaCosta, Jeffrey M.
Hernández-Baños, Blanca E.
Engilis Jr, Andrew
Sorenson, Michael D.
Peters, Jeffrey L.

September 2015

Speciation is a continuous and dynamic process, and studying organisms during the early stages of th...

IMa2

Andreas S. Chavez (3318294)

November 2016

IMa2 file used for analyses of isolation with migration. Data includes DNA sequences from 15 nuclear...

Sequences and comparisons of duck mitochondrial DNA control regions

Liu, HT

[[abstract]]In this study, the nucleotide sequences of the displacement loop (D-loop) and the riboso...

Phylogenetic Analysis of Duck Species from Tegal Indonesia Using 18S Ribosomal RNA and Mitochondrial COI Gene

Kusumaningrum, Hermin Pancasakti
Haryanti, Wahyu Dewi Utari
Rahayu, Annisa Rizki

January 2018

Background and Objective: Tegal duck is a domestic waterfowl species known as a major producer of eg...

Abstract

Extracted data

IMa2.Input.FILES

Abstract

Extracted data

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