Dotplot alignments of assembled strands against the reference genome sequence of <i>A. oryzae</i>.

<p>Alignments shorter than 4000 bp were omitted from the plots. Forward and reverse alignments are plotted in red and blue colors, respectively. The Roman numerals I-VIII on the abscissa are the chromosome index of <i>A. oryzae</i>. (a) The MSSH assembly, (b) the denovo2 assembly.