Perl script 1

Johanna L. A. Paijmans (475389)
Joerns Fickel (2605735)
Alexandre Courtiol (361429)
Michael Hofreiter (2821)
Daniel W. Förster (3210126)

Publication date

October 2016

DOI

Abstract

Perl script written by Kanchon Dasmahapatra (University of York; kanchon.dasmahapatra@york.ac.uk). This script uses a variant file (VCF) generated by GATK to call the individual bases per position for a haploid genome. After this script, run "convert_callsfile_to_one_line_fasta.pl" script to covert the base calls to a fasta file

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Perl script 1

Abstract

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Perl script 1

Abstract

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