Proteins increased in abundance in the cwp84 mutant biofilm proteome compared with the 630Δerm parental strain biofilm proteome.

Cellular abundance level changes of cell membrane, transport, stress response, transcriptional regulation, virulence and phage-related proteins in Δrex mutant relative to wild-type under anaerobiosis and aerobiosis.

Sabrina Laouami (629162)
Géremy Clair (629163)
Jean Armengaud (16857)
Catherine Duport (629164)

September 2014

Only changes satisfying statistical criteria (p-value<0.05) at least in one growth conditi...

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions.

Mori, Matteo
Zhang, Zhongge
Banaei-Esfahani, Amir
Lalanne, Jean-Benoît
Okano, Hiroyuki
Collins, Ben C
Schmidt, Alexander
Schubert, Olga T
Lee, Deok-Sun
Li, Gene-Wei
Aebersold, Ruedi
Hwa, Terence
Ludwig, Christina

May 2021

Accurate measurements of cellular protein concentrations are invaluable to quantitative studies of g...

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions

Matteo Mori
Zhongge Zhang
Amir Banaei‐Esfahani
Jean‐Benoît Lalanne
Hiroyuki Okano
Ben C Collins
Alexander Schmidt
Olga T Schubert
Deok‐Sun Lee
Gene‐Wei Li
Ruedi Aebersold
Terence Hwa
Christina Ludwig

May 2021

Abstract Accurate measurements of cellular protein concentrations are invaluable to quantitative stu...

Proteins increased in abundance in the 630Δerm parental strain biofilm proteome compared with the cwp84 mutant biofilm proteome.

Véronique Pantaléon (731559)
Anna Philibertine Soavelomandroso (731560)
Sylvie Bouttier (544363)
Romain Briandet (74574)
Bryan Roxas (248492)
Michele Chu (731561)
Anne Collignon (280157)
Claire Janoir (531655)
Gayatri Vedantam (248507)
Thomas Candela (74582)

April 2015

Proteins increased in abundance in the 630Δerm parental strain biofilm proteome compared w...

Distribution of surface, matrix and released (secretome) proteins of the 630Δerm parental strain.

Véronique Pantaléon (731559)
Anna Philibertine Soavelomandroso (731560)
Sylvie Bouttier (544363)
Romain Briandet (74574)
Bryan Roxas (248492)
Michele Chu (731561)
Anne Collignon (280157)
Claire Janoir (531655)
Gayatri Vedantam (248507)
Thomas Candela (74582)

April 2015

* proteins found in the same quantity in the surface proteome of bacteria in biofilm and in biofi...

Impact of rpoS Deletion on the Proteome of Escherichia coli Grown Planktonically and as Biofilm

Collet, Anthony
Cosette, Pascal
Beloin, Christophe
Ghigo, Jean-Marc
Rihouey, Christophe
Lerouge, Patrice
Junter, Guy-Alain
Jouenne, Thierry

November 2008

International audienceTo investigate the role of rpoS in gene expression of Escherichia coli cells g...

The cwp84 mutant strain forms a robust biofilm.

Véronique Pantaléon (731559)
Anna Philibertine Soavelomandroso (731560)
Sylvie Bouttier (544363)
Romain Briandet (74574)
Bryan Roxas (248492)
Michele Chu (731561)
Anne Collignon (280157)
Claire Janoir (531655)
Gayatri Vedantam (248507)
Thomas Candela (74582)

April 2015

cwp84 mutant grown in BHIS + glucose for 72 hours in liquid culture forms macroscopic stru...

Marlise I. Klein (133650)
Jin Xiao (111246)
Bingwen Lu (133654)
Claire M. Delahunty (133658)
John R. Yates III (133663)
Hyun Koo (133666)

September 2012

The protein abundance is represented by spectral counting (n = 2).*Normalized by the numbe...

Proteomics analysis of efhP mutant strains.

Svetlana A. Sarkisova (576395)
Shalaka R. Lotlikar (576396)
Manita Guragain (576397)
Ryan Kubat (576398)
John Cloud (576399)
Michael J. Franklin (456707)
Marianna A. Patrauchan (576400)

June 2014

Sections of 2D gels showing selected proteins that are affected by the efhP mutation in FR...

Protein profiles in PpGuava and PpEucalyptus and the correlation with their physiological variability.

Maria Carolina Quecine (843623)
Thiago Falda Leite (843624)
Andressa Peres Bini (843625)
Thais Regiani (805763)
Lívia Maria Franceschini (843626)
Ilara Gabriela Frasson Budzinski (843627)
Felipe Garbelini Marques (843628)
Mônica Teresa Veneziano Labate (843629)
Simone Guidetti-Gonzalez (843630)
David Henry Moon (843631)
Carlos Alberto Labate (105597)

January 2016

While proteins correlated to fungal virulence and stress response had the abundance increased in ...

The identification of global patterns and unique signatures of proteins across 14 environments using outer membrane proteomics of bacteria.

Schliep, M
Ryall, B
Ferenci, T

November 2012

We test the hypothesis that organisms sourced from different environments exhibit unique fingerprint...

Numbers of genes, proteins and metabolites of P. aeruginosa PAO1 differently expressed in biofilms grown on AUM compared to 10-fold diluted LB grown biofilms.

Petra Tielen (445352)
Nathalie Rosin (445353)
Ann-Kathrin Meyer (445354)
Katrin Dohnt (445355)
Isam Haddad (74931)
Lothar Jänsch (28449)
Johannes Klein (74926)
Maike Narten (445356)
Claudia Pommerenke (150761)
Maurice Scheer (9894)
Max Schobert (19280)
Dietmar Schomburg (19141)
Bernhard Thielen (74928)
Dieter Jahn (9897)

August 2013

Numbers of genes, proteins and metabolites of P. aeruginosa PAO1 differently expressed in ...

The Core Proteome of Biofilm-Grown Clinical Isolates.

Erdmann, Jelena
Thöming, Janne G
Pohl, Sarah
Pich, Andreas
Lenz, Christof
Häussler, Susanne

September 2019

Comparative genomics has greatly facilitated the identification of shared as well as unique features...

The Clostridium difficile Protease Cwp84 Modulates both Biofilm Formation and Cell-Surface Properties

Pantaléon, Véronique
Soavelomandroso, Anna Philibertine
Bouttier, Sylvie
Briandet, Romain
Roxas, Bryan
Chu, Michele
Collignon, Anne
Janoir, Claire
Vedantam, Gayatri

January 2015

Clostridium difficile is responsible for 15-20% of antibiotic-associated diarrheas, and nearly all c...

Most classes of proteins do not respond to small growth perturbations induced by protein misfolding.

Kerry A. Geiler-Samerotte (462866)
Tatsunori Hashimoto (462867)
Michael F. Dion (462868)
Bogdan A. Budnik (462869)
Edoardo M. Airoldi (268357)
D. Allan Drummond (462870)

September 2013

Expected differences in protein abundance levels are inferred from transcript data [<a href="http...

Cellular abundance level changes of cell membrane, transport, stress response, transcriptional regulation, virulence and phage-related proteins in Δrex mutant relative to wild-type under anaerobiosis and aerobiosis.

Sabrina Laouami (629162)
Géremy Clair (629163)
Jean Armengaud (16857)
Catherine Duport (629164)

September 2014

Only changes satisfying statistical criteria (p-value<0.05) at least in one growth conditi...

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions.

Mori, Matteo
Zhang, Zhongge
Banaei-Esfahani, Amir
Lalanne, Jean-Benoît
Okano, Hiroyuki
Collins, Ben C
Schmidt, Alexander
Schubert, Olga T
Lee, Deok-Sun
Li, Gene-Wei
Aebersold, Ruedi
Hwa, Terence
Ludwig, Christina

May 2021

Accurate measurements of cellular protein concentrations are invaluable to quantitative studies of g...

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions

Matteo Mori
Zhongge Zhang
Amir Banaei‐Esfahani
Jean‐Benoît Lalanne
Hiroyuki Okano
Ben C Collins
Alexander Schmidt
Olga T Schubert
Deok‐Sun Lee
Gene‐Wei Li
Ruedi Aebersold
Terence Hwa
Christina Ludwig

May 2021

Abstract Accurate measurements of cellular protein concentrations are invaluable to quantitative stu...

Proteins increased in abundance in the 630Δerm parental strain biofilm proteome compared with the cwp84 mutant biofilm proteome.

Véronique Pantaléon (731559)
Anna Philibertine Soavelomandroso (731560)
Sylvie Bouttier (544363)
Romain Briandet (74574)
Bryan Roxas (248492)
Michele Chu (731561)
Anne Collignon (280157)
Claire Janoir (531655)
Gayatri Vedantam (248507)
Thomas Candela (74582)

April 2015

Proteins increased in abundance in the 630Δerm parental strain biofilm proteome compared w...

Distribution of surface, matrix and released (secretome) proteins of the 630Δerm parental strain.

Véronique Pantaléon (731559)
Anna Philibertine Soavelomandroso (731560)
Sylvie Bouttier (544363)
Romain Briandet (74574)
Bryan Roxas (248492)
Michele Chu (731561)
Anne Collignon (280157)
Claire Janoir (531655)
Gayatri Vedantam (248507)
Thomas Candela (74582)

April 2015

* proteins found in the same quantity in the surface proteome of bacteria in biofilm and in biofi...

Impact of rpoS Deletion on the Proteome of Escherichia coli Grown Planktonically and as Biofilm

Collet, Anthony
Cosette, Pascal
Beloin, Christophe
Ghigo, Jean-Marc
Rihouey, Christophe
Lerouge, Patrice
Junter, Guy-Alain
Jouenne, Thierry

November 2008

International audienceTo investigate the role of rpoS in gene expression of Escherichia coli cells g...

The cwp84 mutant strain forms a robust biofilm.

Véronique Pantaléon (731559)
Anna Philibertine Soavelomandroso (731560)
Sylvie Bouttier (544363)
Romain Briandet (74574)
Bryan Roxas (248492)
Michele Chu (731561)
Anne Collignon (280157)
Claire Janoir (531655)
Gayatri Vedantam (248507)
Thomas Candela (74582)

April 2015

cwp84 mutant grown in BHIS + glucose for 72 hours in liquid culture forms macroscopic stru...

Marlise I. Klein (133650)
Jin Xiao (111246)
Bingwen Lu (133654)
Claire M. Delahunty (133658)
John R. Yates III (133663)
Hyun Koo (133666)

September 2012

The protein abundance is represented by spectral counting (n = 2).*Normalized by the numbe...

Proteomics analysis of efhP mutant strains.

Svetlana A. Sarkisova (576395)
Shalaka R. Lotlikar (576396)
Manita Guragain (576397)
Ryan Kubat (576398)
John Cloud (576399)
Michael J. Franklin (456707)
Marianna A. Patrauchan (576400)

June 2014

Sections of 2D gels showing selected proteins that are affected by the efhP mutation in FR...

Protein profiles in PpGuava and PpEucalyptus and the correlation with their physiological variability.

Maria Carolina Quecine (843623)
Thiago Falda Leite (843624)
Andressa Peres Bini (843625)
Thais Regiani (805763)
Lívia Maria Franceschini (843626)
Ilara Gabriela Frasson Budzinski (843627)
Felipe Garbelini Marques (843628)
Mônica Teresa Veneziano Labate (843629)
Simone Guidetti-Gonzalez (843630)
David Henry Moon (843631)
Carlos Alberto Labate (105597)

January 2016

While proteins correlated to fungal virulence and stress response had the abundance increased in ...

The identification of global patterns and unique signatures of proteins across 14 environments using outer membrane proteomics of bacteria.

Schliep, M
Ryall, B
Ferenci, T

November 2012

We test the hypothesis that organisms sourced from different environments exhibit unique fingerprint...

Numbers of genes, proteins and metabolites of P. aeruginosa PAO1 differently expressed in biofilms grown on AUM compared to 10-fold diluted LB grown biofilms.

Petra Tielen (445352)
Nathalie Rosin (445353)
Ann-Kathrin Meyer (445354)
Katrin Dohnt (445355)
Isam Haddad (74931)
Lothar Jänsch (28449)
Johannes Klein (74926)
Maike Narten (445356)
Claudia Pommerenke (150761)
Maurice Scheer (9894)
Max Schobert (19280)
Dietmar Schomburg (19141)
Bernhard Thielen (74928)
Dieter Jahn (9897)

August 2013

Numbers of genes, proteins and metabolites of P. aeruginosa PAO1 differently expressed in ...

The Core Proteome of Biofilm-Grown Clinical Isolates.

Erdmann, Jelena
Thöming, Janne G
Pohl, Sarah
Pich, Andreas
Lenz, Christof
Häussler, Susanne

September 2019

Comparative genomics has greatly facilitated the identification of shared as well as unique features...

The Clostridium difficile Protease Cwp84 Modulates both Biofilm Formation and Cell-Surface Properties

Pantaléon, Véronique
Soavelomandroso, Anna Philibertine
Bouttier, Sylvie
Briandet, Romain
Roxas, Bryan
Chu, Michele
Collignon, Anne
Janoir, Claire
Vedantam, Gayatri

January 2015

Clostridium difficile is responsible for 15-20% of antibiotic-associated diarrheas, and nearly all c...

Most classes of proteins do not respond to small growth perturbations induced by protein misfolding.

Kerry A. Geiler-Samerotte (462866)
Tatsunori Hashimoto (462867)
Michael F. Dion (462868)
Bogdan A. Budnik (462869)
Edoardo M. Airoldi (268357)
D. Allan Drummond (462870)

September 2013

Expected differences in protein abundance levels are inferred from transcript data [<a href="http...

Cellular abundance level changes of cell membrane, transport, stress response, transcriptional regulation, virulence and phage-related proteins in Δrex mutant relative to wild-type under anaerobiosis and aerobiosis.

Sabrina Laouami (629162)
Géremy Clair (629163)
Jean Armengaud (16857)
Catherine Duport (629164)

September 2014

Only changes satisfying statistical criteria (p-value<0.05) at least in one growth conditi...

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions.

Mori, Matteo
Zhang, Zhongge
Banaei-Esfahani, Amir
Lalanne, Jean-Benoît
Okano, Hiroyuki
Collins, Ben C
Schmidt, Alexander
Schubert, Olga T
Lee, Deok-Sun
Li, Gene-Wei
Aebersold, Ruedi
Hwa, Terence
Ludwig, Christina

May 2021

Accurate measurements of cellular protein concentrations are invaluable to quantitative studies of g...

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions

Matteo Mori
Zhongge Zhang
Amir Banaei‐Esfahani
Jean‐Benoît Lalanne
Hiroyuki Okano
Ben C Collins
Alexander Schmidt
Olga T Schubert
Deok‐Sun Lee
Gene‐Wei Li
Ruedi Aebersold
Terence Hwa
Christina Ludwig

May 2021

Abstract Accurate measurements of cellular protein concentrations are invaluable to quantitative stu...

Proteins increased in abundance in the <i>cwp84</i> mutant biofilm proteome compared with the 630Δ<i>erm</i> parental strain biofilm proteome.

Abstract

Extracted data

Proteins increased in abundance in the <i>cwp84</i> mutant biofilm proteome compared with the 630Δ<i>erm</i> parental strain biofilm proteome.

Abstract

Extracted data

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