Details of SSU rDNA sequences used to generate the molecular phylogeny for extant Globigerinoides.

Published online The promise of a DNA taxonomy

Mark L. Blaxter

January 2015

Not only is the number of described species a very small proportion of the estimated extant number o...

TAXONOMY Molecular Biology as a Tool for Taxonomy

Kenneth H

October 2016

Bacterial taxonomy based on phenotypic properties has encountered several problems: many organisms g...

Elphidiids complete SSU rDNA phylogeny.

Loïc Pillet (180515)
Delia Fontaine (180518)
Jan Pawlowski (3853)

February 2012

Bayesian phylogeny implemented using the GTR+Γ model of evolution. RAxML bootstrap values ...

Maximum likelihood phylogeny of representative SSU rDNA sequences of extant species of the genus “Globigerinoides” and related taxa.

Silvia Spezzaferri (746587)
Michal Kucera (303387)
Paul Nicholas Pearson (746588)
Bridget Susan Wade (746589)
Sacha Rappo (746590)
Christopher Robert Poole (746591)
Raphaël Morard (200006)
Claudio Stalder (746592)

May 2015

The lower panels show the topology for trees rooted on different outgroups (<a href="http://www.p...

Summary of genetic distances of the SSU rDNA over the p distance calculated by uncorrected genetic distance (UGD) model among and within 66 consensus sequences ( = 66 strains; each consensus sequence was constructed with cloned sequences and/or directly sequence of each strain) of Gambierdiscus species/phylotypes, and other protists.

Tomohiro Nishimura (193899)
Shinya Sato (119852)
Wittaya Tawong (193910)
Hiroshi Sakanari (193906)
Keita Uehara (193903)
Md Mahfuzur Rahman Shah (401634)
Shoichiro Suda (193922)
Takeshi Yasumoto (193918)
Yohsuke Taira (401635)
Haruo Yamaguchi (193925)
Masao Adachi (193928)

April 2013

bp*:Nucleotide bases of the SSU rDNA used for calculations.n**: Numbers of species (specie...

Sequences list of five different genetic regions from three different sample types (1: GMGA_cloning, 2: isolate protonema and 3: dried GMGA_cloning) and their closest relatives.

Jun Uetake (662530)
Sota Tanaka (662531)
Kosuke Hara (662532)
Yukiko Tanabe (355633)
Denis Samyn (662533)
Hideaki Motoyama (662534)
Satoshi Imura (662535)
Shiro Kohshima (576360)

November 2014

*show second highly related species.Sequences list of five different genetic regions from ...

Interspecic rDNA restriction fragment length polymorphism in Globodera species, parasites of Solanaceous plants

Murielle Thiéry
Didier Mugniéry

January 1996

Swnmary- The status of the Globodera species that are parasites of Solanaceous is still unclear due ...

Molecular taxonomy and natural history collections.

Groenenberg, D.S.J.

December 2012

Using a wide diversity of animal groups, this thesis illustrates how molecular data can provide new ...

Bayesian phylogeny of the SSU rDNA sequences obtained from the collodarians.

Yoshiyuki Ishitani (167148)
Yurika Ujiié (167151)
Colomban de Vargas (103556)
Fabrice Not (103563)
Kozo Takahashi (167154)

May 2012

Four novel collodarian sequences and two environmental sequences (<3 µm) are shown in bold and li...

Comparative Microbial Diversity in the Gastrointestinal Tracts of Food Animal Species1

Joyce M. Simpson
Svetlana A. Kocherginskaya
Roustam I. Aminov
Laura T. Skerlos
Terence M. Bradley
Roderick I. Mackie
Bryan A. White

March 2015

SYNOPSIS. Molecular tools based on small subunit (SSU) rDNA gene sequences offer a powerful and rapi...

Prokaryotic species are sui generis evolutionary units

Palmer, Marike
Venter, S.N. (Stephanus Nicolaas)
Coetzee, Martin Petrus Albertus
Steenkamp, Emma Theodora

March 2019

Many gene flow barriers associated with genetic isolation during eukaryotic species divergence, are ...

The molecularisation of taxonomy

Lee, M.

January 2004

Molecular phylogeny of the phylum Gastrotricha: New data brings together molecules and morphology

Paps, Jordi
Riutort, Marta

April 2012

Gastrotricha is a species-rich phylum of microscopical animals that contains two main orders, Chaeto...

Ultrametric gene genealogy and clusters of specimens recognized as putative species by the single-threshold method of GMYC.

Sittiporn Parnmen (110727)
Achariya Rangsiruji (110731)
Pachara Mongkolsuk (110733)
Kansri Boonpragob (110735)
Aparna Nutakki (110738)
H. Thorsten Lumbsch (110741)

December 2012

Nodes of genetic clusters recognized as putative species are highlighted in red.</p

Integrating DNA and morphological taxonomy to describe diversity in poorly studied microscopic animals: new species of the genus Abrochtha Bryce, 1910 (Rotifera: Bdelloidea: Philodinavidae)

C.W. Birky jr.
C. Ricci
G. Melone
D. Fontaneto

January 2011

Specimens of the bdelloid rotifer genus Abrochtha were collected from mountain and desert sites in t...

Published online The promise of a DNA taxonomy

Mark L. Blaxter

January 2015

Not only is the number of described species a very small proportion of the estimated extant number o...

TAXONOMY Molecular Biology as a Tool for Taxonomy

Kenneth H

October 2016

Bacterial taxonomy based on phenotypic properties has encountered several problems: many organisms g...

Elphidiids complete SSU rDNA phylogeny.

Loïc Pillet (180515)
Delia Fontaine (180518)
Jan Pawlowski (3853)

February 2012

Bayesian phylogeny implemented using the GTR+Γ model of evolution. RAxML bootstrap values ...

Maximum likelihood phylogeny of representative SSU rDNA sequences of extant species of the genus “Globigerinoides” and related taxa.

Silvia Spezzaferri (746587)
Michal Kucera (303387)
Paul Nicholas Pearson (746588)
Bridget Susan Wade (746589)
Sacha Rappo (746590)
Christopher Robert Poole (746591)
Raphaël Morard (200006)
Claudio Stalder (746592)

May 2015

The lower panels show the topology for trees rooted on different outgroups (<a href="http://www.p...

Summary of genetic distances of the SSU rDNA over the p distance calculated by uncorrected genetic distance (UGD) model among and within 66 consensus sequences ( = 66 strains; each consensus sequence was constructed with cloned sequences and/or directly sequence of each strain) of Gambierdiscus species/phylotypes, and other protists.

Tomohiro Nishimura (193899)
Shinya Sato (119852)
Wittaya Tawong (193910)
Hiroshi Sakanari (193906)
Keita Uehara (193903)
Md Mahfuzur Rahman Shah (401634)
Shoichiro Suda (193922)
Takeshi Yasumoto (193918)
Yohsuke Taira (401635)
Haruo Yamaguchi (193925)
Masao Adachi (193928)

April 2013

bp*:Nucleotide bases of the SSU rDNA used for calculations.n**: Numbers of species (specie...

Sequences list of five different genetic regions from three different sample types (1: GMGA_cloning, 2: isolate protonema and 3: dried GMGA_cloning) and their closest relatives.

Jun Uetake (662530)
Sota Tanaka (662531)
Kosuke Hara (662532)
Yukiko Tanabe (355633)
Denis Samyn (662533)
Hideaki Motoyama (662534)
Satoshi Imura (662535)
Shiro Kohshima (576360)

November 2014

*show second highly related species.Sequences list of five different genetic regions from ...

Interspecic rDNA restriction fragment length polymorphism in Globodera species, parasites of Solanaceous plants

Murielle Thiéry
Didier Mugniéry

January 1996

Swnmary- The status of the Globodera species that are parasites of Solanaceous is still unclear due ...

Molecular taxonomy and natural history collections.

Groenenberg, D.S.J.

December 2012

Using a wide diversity of animal groups, this thesis illustrates how molecular data can provide new ...

Bayesian phylogeny of the SSU rDNA sequences obtained from the collodarians.

Yoshiyuki Ishitani (167148)
Yurika Ujiié (167151)
Colomban de Vargas (103556)
Fabrice Not (103563)
Kozo Takahashi (167154)

May 2012

Four novel collodarian sequences and two environmental sequences (<3 µm) are shown in bold and li...

Comparative Microbial Diversity in the Gastrointestinal Tracts of Food Animal Species1

Joyce M. Simpson
Svetlana A. Kocherginskaya
Roustam I. Aminov
Laura T. Skerlos
Terence M. Bradley
Roderick I. Mackie
Bryan A. White

March 2015

SYNOPSIS. Molecular tools based on small subunit (SSU) rDNA gene sequences offer a powerful and rapi...

Prokaryotic species are sui generis evolutionary units

Palmer, Marike
Venter, S.N. (Stephanus Nicolaas)
Coetzee, Martin Petrus Albertus
Steenkamp, Emma Theodora

March 2019

Many gene flow barriers associated with genetic isolation during eukaryotic species divergence, are ...

The molecularisation of taxonomy

Lee, M.

January 2004

Molecular phylogeny of the phylum Gastrotricha: New data brings together molecules and morphology

Paps, Jordi
Riutort, Marta

April 2012

Gastrotricha is a species-rich phylum of microscopical animals that contains two main orders, Chaeto...

Ultrametric gene genealogy and clusters of specimens recognized as putative species by the single-threshold method of GMYC.

Sittiporn Parnmen (110727)
Achariya Rangsiruji (110731)
Pachara Mongkolsuk (110733)
Kansri Boonpragob (110735)
Aparna Nutakki (110738)
H. Thorsten Lumbsch (110741)

December 2012

Nodes of genetic clusters recognized as putative species are highlighted in red.</p

Integrating DNA and morphological taxonomy to describe diversity in poorly studied microscopic animals: new species of the genus Abrochtha Bryce, 1910 (Rotifera: Bdelloidea: Philodinavidae)

C.W. Birky jr.
C. Ricci
G. Melone
D. Fontaneto

January 2011

Specimens of the bdelloid rotifer genus Abrochtha were collected from mountain and desert sites in t...

Published online The promise of a DNA taxonomy

Mark L. Blaxter

January 2015

Not only is the number of described species a very small proportion of the estimated extant number o...

TAXONOMY Molecular Biology as a Tool for Taxonomy

Kenneth H

October 2016

Bacterial taxonomy based on phenotypic properties has encountered several problems: many organisms g...

Elphidiids complete SSU rDNA phylogeny.

Loïc Pillet (180515)
Delia Fontaine (180518)
Jan Pawlowski (3853)

February 2012

Bayesian phylogeny implemented using the GTR+Γ model of evolution. RAxML bootstrap values ...

Details of SSU rDNA sequences used to generate the molecular phylogeny for extant <i>Globigerinoides</i>.

Abstract

Extracted data

Details of SSU rDNA sequences used to generate the molecular phylogeny for extant <i>Globigerinoides</i>.

Abstract

Extracted data

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