Population structure of 107 aromatic and quality rice accessions of North-eastern India.

Phylogenomic and principal component analysis of African rice.

Jae Young Choi (145281)
Maricris Zaidem (595942)
Rafal Gutaker (6433940)
Katherine Dorph (6433943)
Rakesh Kumar Singh (166994)
Michael D. Purugganan (169794)

March 2019

(A) Neighbor-joining tree built using a distance matrix estimated from NGSdist. Color strips represe...

Phylogenetic tree and PCA analysis for 419 rice landraces.

Xinghai Yang (3156396)
Xiuzhong Xia (5204183)
Yu Zeng (67023)
Baoxuan Nong (5204180)
Zongqiong Zhang (5204174)
Yanyan Wu (1474534)
Faqian Xiong (5204186)
Yuexiong Zhang (5204177)
Haifu Liang (5204171)
Guofu Deng (5204189)
Danting Li (5185355)

May 2018

(a) Clustering of 419 rice landraces; (b) PCA analysis of 419 rice landraces.</p

Phylogenetic relationships among the 180 rice accessions, estimated using weighted neighbor-joining analysis of 3259 SNP alleles.

Jun-ichi Yonemaru (177933)
Toshio Yamamoto (65296)
Kaworu Ebana (177939)
Eiji Yamamoto (113384)
Hideki Nagasaki (3056)
Taeko Shibaya (177945)
Masahiro Yano (177951)

March 2012

The horizontal bar indicates distance based on the simple matching coefficient.</p

Population structure analysis in 95 rice accessions.

Erbao Liu (705639)
Xiaoli Liu (165371)
Siyuan Zeng (705640)
Kaiming Zhao (705641)
Changfeng Zhu (705642)
Yang Liu (4829)
Manamik Caleb Breria (705643)
Baojuan Zhang (705644)
Delin Hong (705645)

March 2015

(A) Changes in the likelihood value. (B) Posterior probability of 95 accessions belonging to seve...

Model based clustering of (a) SSR (K=5) and (b) SNP (K=15) of Indica rice cultivars, (boxes indicates distribution of Autumn rice, also known as 'Aus' in West Bengal, 'Ahu' in Assam, 'Beali' in Orissa, 'Bhadai' in Bihar, 'Virippu' in Kerala and 'Kuruvai/kar/ Sornavari' in Tamil Nadu).

Nivedita Singh (499697)
Debjani Roy Choudhury (499698)
Amit Kumar Singh (319663)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. K. Tyagi (499701)
N. K. Singh (499702)
Rakesh Singh (499703)

December 2013

Model based clustering of (a) SSR (K=5) and (b) SNP (K=15) of Indica rice cultivars, (boxes indic...

Population structure of 809 accessions of S. tuberosum group Andigenum.

Jhon Berdugo-Cely (3812746)
Raúl Iván Valbuena (3812752)
Erika Sánchez-Betancourt (3812749)
Luz Stella Barrero (341291)
Roxana Yockteng (80517)

March 2017

(A) Clustering Structure analysis. (B) NJ-tree based on Nei´s genetic distances. (C) Principal Co...

Population Structure of Nation-Wide Rice in Thailand

Phanchita Vejchasarn
Jeremy R. Shearman
Usawadee Chaiprom
Yotwarit Phansenee
Arissara Suthanthangjai
Jirapong Jairin
Varapong Chamarerk
Tatpong Tulyananda
Chainarong Amornbunchornvej

October 2021

Abstract Background Thailand is a country with large diversity in rice varieties due to its rich and...

Structure analysis of the Japanese rice population using a model with four ancestral groups.

Jun-ichi Yonemaru (177933)
Toshio Yamamoto (65296)
Kaworu Ebana (177939)
Eiji Yamamoto (113384)
Hideki Nagasaki (3056)
Taeko Shibaya (177945)
Masahiro Yano (177951)

March 2012

In the upper part of the graph, each vertical bar represents a single accession; values displayed...

Analysis of genetic diversity and population structure of rice germplasm from north-eastern region of India and development of a core germplasm set.

Debjani Roy Choudhury
Nivedita Singh
Amit Kumar Singh
Sundeep Kumar
Kalyani Srinivasan
R K Tyagi
Altaf Ahmad
N K Singh
Rakesh Singh

The North-Eastern region (NER) of India, comprising of Arunachal Pradesh, Assam, Manipur, Meghalaya,...

Analysis of Genetic Diversity and Population Structure of Rice Germplasm from North-Eastern Region of India and Development of a Core Germplasm Set

Debjani Roy Choudhury (499698)
Nivedita Singh (499697)
Amit Kumar Singh (319663)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. K. Tyagi (499701)
Altaf Ahmad (114928)
N. K. Singh (499702)
Rakesh Singh (499703)

November 2014

<div>The North-Eastern region (NER) of India, comprising of Arunachal Pradesh, Assam, Manipur, Me...

UPGMA clustering of 95 rice accessions.

Shunwu Yu (161566)
Fengxian Liao (184258)
Feiming Wang (184262)
Weiwei Wen (178912)
Jiajia Li (184267)
Hanwei Mei (184270)
Lijun Luo (161578)

February 2012

A, clustering based on TILLING markers of promoters; B, clustering based on InDel loci. The arrow...

Genetic relationships of 21 weedy rice populations (Am-1 to Pu-2) and rice varieties (CV) from STRUCTURE analysis.

Zhuoxian He (667654)
Xiaoqi Jiang (667655)
Disna Ratnasekera (667656)
Fabrizio Grassi (483025)
Udugahapattuwage Perera (667657)
Bao-Rong Lu (315734)

December 2014

Each individual is represented by a vertical bar assigned into three colors, with height proporti...

Genetic Diversity and Population Structure in Aromatic and Quality Rice (Oryza sativa L.) Landraces from North-Eastern India.

Somnath Roy
Amrita Banerjee
Bandapkuper Mawkhlieng
A K Misra
A Pattanayak
G D Harish
S K Singh
S V Ngachan
K C Bansal

The North-eastern (NE) India, comprising of Arunachal Pradesh, Assam, Manipur, Meghalaya, Mizoram, N...

Structure and geographic clustering of genetic variation in O. barthii and O. glaberrima.

Margaretha A. Veltman (6429245)
Jonathan M. Flowers (153850)
Tinde R. van Andel (6429248)
M. Eric Schranz (750242)

March 2019

A. Admixture analysis with K = 8 ancestral populations of wild and domesticated rice accessions comb...

Genetic Diversity and Population Structure in Aromatic and Quality Rice (Oryza sativa L.) Landraces from North-Eastern India

Somnath Roy (754329)
Amrita Banerjee (382658)
Bandapkuper Mawkhlieng (754330)
A. K. Misra (754331)
A. Pattanayak (754332)
G. D. Harish (754333)
S. K. Singh (748699)
S. V. Ngachan (754334)
K. C. Bansal (545775)

June 2015

<div>The North-eastern (NE) India, comprising of Arunachal Pradesh, Assam, Manipur, Meghalaya, Mi...

Phylogenomic and principal component analysis of African rice.

Jae Young Choi (145281)
Maricris Zaidem (595942)
Rafal Gutaker (6433940)
Katherine Dorph (6433943)
Rakesh Kumar Singh (166994)
Michael D. Purugganan (169794)

March 2019

(A) Neighbor-joining tree built using a distance matrix estimated from NGSdist. Color strips represe...

Phylogenetic tree and PCA analysis for 419 rice landraces.

Xinghai Yang (3156396)
Xiuzhong Xia (5204183)
Yu Zeng (67023)
Baoxuan Nong (5204180)
Zongqiong Zhang (5204174)
Yanyan Wu (1474534)
Faqian Xiong (5204186)
Yuexiong Zhang (5204177)
Haifu Liang (5204171)
Guofu Deng (5204189)
Danting Li (5185355)

May 2018

(a) Clustering of 419 rice landraces; (b) PCA analysis of 419 rice landraces.</p

Phylogenetic relationships among the 180 rice accessions, estimated using weighted neighbor-joining analysis of 3259 SNP alleles.

Jun-ichi Yonemaru (177933)
Toshio Yamamoto (65296)
Kaworu Ebana (177939)
Eiji Yamamoto (113384)
Hideki Nagasaki (3056)
Taeko Shibaya (177945)
Masahiro Yano (177951)

March 2012

The horizontal bar indicates distance based on the simple matching coefficient.</p

Population structure analysis in 95 rice accessions.

Erbao Liu (705639)
Xiaoli Liu (165371)
Siyuan Zeng (705640)
Kaiming Zhao (705641)
Changfeng Zhu (705642)
Yang Liu (4829)
Manamik Caleb Breria (705643)
Baojuan Zhang (705644)
Delin Hong (705645)

March 2015

(A) Changes in the likelihood value. (B) Posterior probability of 95 accessions belonging to seve...

Model based clustering of (a) SSR (K=5) and (b) SNP (K=15) of Indica rice cultivars, (boxes indicates distribution of Autumn rice, also known as 'Aus' in West Bengal, 'Ahu' in Assam, 'Beali' in Orissa, 'Bhadai' in Bihar, 'Virippu' in Kerala and 'Kuruvai/kar/ Sornavari' in Tamil Nadu).

Nivedita Singh (499697)
Debjani Roy Choudhury (499698)
Amit Kumar Singh (319663)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. K. Tyagi (499701)
N. K. Singh (499702)
Rakesh Singh (499703)

December 2013

Model based clustering of (a) SSR (K=5) and (b) SNP (K=15) of Indica rice cultivars, (boxes indic...

Population structure of 809 accessions of S. tuberosum group Andigenum.

Jhon Berdugo-Cely (3812746)
Raúl Iván Valbuena (3812752)
Erika Sánchez-Betancourt (3812749)
Luz Stella Barrero (341291)
Roxana Yockteng (80517)

March 2017

(A) Clustering Structure analysis. (B) NJ-tree based on Nei´s genetic distances. (C) Principal Co...

Population Structure of Nation-Wide Rice in Thailand

Phanchita Vejchasarn
Jeremy R. Shearman
Usawadee Chaiprom
Yotwarit Phansenee
Arissara Suthanthangjai
Jirapong Jairin
Varapong Chamarerk
Tatpong Tulyananda
Chainarong Amornbunchornvej

October 2021

Abstract Background Thailand is a country with large diversity in rice varieties due to its rich and...

Structure analysis of the Japanese rice population using a model with four ancestral groups.

Jun-ichi Yonemaru (177933)
Toshio Yamamoto (65296)
Kaworu Ebana (177939)
Eiji Yamamoto (113384)
Hideki Nagasaki (3056)
Taeko Shibaya (177945)
Masahiro Yano (177951)

March 2012

In the upper part of the graph, each vertical bar represents a single accession; values displayed...

Analysis of genetic diversity and population structure of rice germplasm from north-eastern region of India and development of a core germplasm set.

Debjani Roy Choudhury
Nivedita Singh
Amit Kumar Singh
Sundeep Kumar
Kalyani Srinivasan
R K Tyagi
Altaf Ahmad
N K Singh
Rakesh Singh

The North-Eastern region (NER) of India, comprising of Arunachal Pradesh, Assam, Manipur, Meghalaya,...

Analysis of Genetic Diversity and Population Structure of Rice Germplasm from North-Eastern Region of India and Development of a Core Germplasm Set

Debjani Roy Choudhury (499698)
Nivedita Singh (499697)
Amit Kumar Singh (319663)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. K. Tyagi (499701)
Altaf Ahmad (114928)
N. K. Singh (499702)
Rakesh Singh (499703)

November 2014

<div>The North-Eastern region (NER) of India, comprising of Arunachal Pradesh, Assam, Manipur, Me...

UPGMA clustering of 95 rice accessions.

Shunwu Yu (161566)
Fengxian Liao (184258)
Feiming Wang (184262)
Weiwei Wen (178912)
Jiajia Li (184267)
Hanwei Mei (184270)
Lijun Luo (161578)

February 2012

A, clustering based on TILLING markers of promoters; B, clustering based on InDel loci. The arrow...

Genetic relationships of 21 weedy rice populations (Am-1 to Pu-2) and rice varieties (CV) from STRUCTURE analysis.

Zhuoxian He (667654)
Xiaoqi Jiang (667655)
Disna Ratnasekera (667656)
Fabrizio Grassi (483025)
Udugahapattuwage Perera (667657)
Bao-Rong Lu (315734)

December 2014

Each individual is represented by a vertical bar assigned into three colors, with height proporti...

Genetic Diversity and Population Structure in Aromatic and Quality Rice (Oryza sativa L.) Landraces from North-Eastern India.

Somnath Roy
Amrita Banerjee
Bandapkuper Mawkhlieng
A K Misra
A Pattanayak
G D Harish
S K Singh
S V Ngachan
K C Bansal

The North-eastern (NE) India, comprising of Arunachal Pradesh, Assam, Manipur, Meghalaya, Mizoram, N...

Structure and geographic clustering of genetic variation in O. barthii and O. glaberrima.

Margaretha A. Veltman (6429245)
Jonathan M. Flowers (153850)
Tinde R. van Andel (6429248)
M. Eric Schranz (750242)

March 2019

A. Admixture analysis with K = 8 ancestral populations of wild and domesticated rice accessions comb...

Genetic Diversity and Population Structure in Aromatic and Quality Rice (Oryza sativa L.) Landraces from North-Eastern India

Somnath Roy (754329)
Amrita Banerjee (382658)
Bandapkuper Mawkhlieng (754330)
A. K. Misra (754331)
A. Pattanayak (754332)
G. D. Harish (754333)
S. K. Singh (748699)
S. V. Ngachan (754334)
K. C. Bansal (545775)

June 2015

<div>The North-eastern (NE) India, comprising of Arunachal Pradesh, Assam, Manipur, Meghalaya, Mi...

Phylogenomic and principal component analysis of African rice.

Jae Young Choi (145281)
Maricris Zaidem (595942)
Rafal Gutaker (6433940)
Katherine Dorph (6433943)
Rakesh Kumar Singh (166994)
Michael D. Purugganan (169794)

March 2019

(A) Neighbor-joining tree built using a distance matrix estimated from NGSdist. Color strips represe...

Phylogenetic tree and PCA analysis for 419 rice landraces.

Xinghai Yang (3156396)
Xiuzhong Xia (5204183)
Yu Zeng (67023)
Baoxuan Nong (5204180)
Zongqiong Zhang (5204174)
Yanyan Wu (1474534)
Faqian Xiong (5204186)
Yuexiong Zhang (5204177)
Haifu Liang (5204171)
Guofu Deng (5204189)
Danting Li (5185355)

May 2018

(a) Clustering of 419 rice landraces; (b) PCA analysis of 419 rice landraces.</p

Phylogenetic relationships among the 180 rice accessions, estimated using weighted neighbor-joining analysis of 3259 SNP alleles.

Jun-ichi Yonemaru (177933)
Toshio Yamamoto (65296)
Kaworu Ebana (177939)
Eiji Yamamoto (113384)
Hideki Nagasaki (3056)
Taeko Shibaya (177945)
Masahiro Yano (177951)

March 2012

The horizontal bar indicates distance based on the simple matching coefficient.</p

Population structure of 107 aromatic and quality rice accessions of North-eastern India.

Abstract

Extracted data

Population structure of 107 aromatic and quality rice accessions of North-eastern India.

Abstract

Extracted data

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