<p>A) Graphical representation of four parameters <i>Max</i>, <i>Kurtosis</i>, <i>Skewness</i> and <i>Bimodality</i>. The dashed curves indicate standard normal distribution, and the light blue area under curve indicates a probability distribution with the corresponding parameter changed. The boxplots of the four parameters and significances of the difference between enhancers and promoters for B) H3K4me1, C) H3K4me2 and D) H3K4me3 in CD4<sup>+</sup> T cells. Significance (<i>P</i>-value) of the difference between two means was calculated by Wilcoxon rank-sum difference test.</p
<p>(A) Screenshot of Su(Hw), Mod(mdg4)2.2, and Shep ChIP-seq signals at the <i>dnt</i> neuronal-expr...
<p>Selected FSC histograms illustrating bimodal and monomodal distributions. x-axis displays the cha...
<p>Dashed line circles represent sample tissues (normal or tumor) and solid line circles represent t...
<p>Conceptual comparison of recently proposed methods for finding peaks in ChIP-Seq data.</p
The Human Genome Project has been completed in 2003, with the sequencing of the human genome. In the...
<p>The ratio of −log<sub>10</sub>(p-value of enrichment) of differentially expressed genes (FDR<0.1)...
<p>(<b>A</b>) The difference in the true-positive rate TP<sub>N</sub>–TP<sub>U</sub> represents the ...
ChIP-Seq has rapidly become the dominant experimental technique in functional genomic and epigenomic...
<p>Independent ChIP-seq experiments are available for some of the factors measured in the hematopoie...
(A) Simulating false positive binding sites. The binding energies of false positive genomic location...
<p>Shown is the average signal (in RPM) for each strand in human ChIP-seq datasets with z-scores ≥20...
<p>(A–H) Box plots representing the distribution of normalized expression values of normal (n = 30),...
<p>The ROI of each case is defined by a dashed line in HE-staining images. The intensity of all valu...
<p>Boxplot representation of raw Ct values obtained from amplification curves. The box indicates the...
Datasets for reproducing figures from the manuscript "Analyzing histone ChIP-seq data with a bin-bas...
<p>(A) Screenshot of Su(Hw), Mod(mdg4)2.2, and Shep ChIP-seq signals at the <i>dnt</i> neuronal-expr...
<p>Selected FSC histograms illustrating bimodal and monomodal distributions. x-axis displays the cha...
<p>Dashed line circles represent sample tissues (normal or tumor) and solid line circles represent t...
<p>Conceptual comparison of recently proposed methods for finding peaks in ChIP-Seq data.</p
The Human Genome Project has been completed in 2003, with the sequencing of the human genome. In the...
<p>The ratio of −log<sub>10</sub>(p-value of enrichment) of differentially expressed genes (FDR<0.1)...
<p>(<b>A</b>) The difference in the true-positive rate TP<sub>N</sub>–TP<sub>U</sub> represents the ...
ChIP-Seq has rapidly become the dominant experimental technique in functional genomic and epigenomic...
<p>Independent ChIP-seq experiments are available for some of the factors measured in the hematopoie...
(A) Simulating false positive binding sites. The binding energies of false positive genomic location...
<p>Shown is the average signal (in RPM) for each strand in human ChIP-seq datasets with z-scores ≥20...
<p>(A–H) Box plots representing the distribution of normalized expression values of normal (n = 30),...
<p>The ROI of each case is defined by a dashed line in HE-staining images. The intensity of all valu...
<p>Boxplot representation of raw Ct values obtained from amplification curves. The box indicates the...
Datasets for reproducing figures from the manuscript "Analyzing histone ChIP-seq data with a bin-bas...
<p>(A) Screenshot of Su(Hw), Mod(mdg4)2.2, and Shep ChIP-seq signals at the <i>dnt</i> neuronal-expr...
<p>Selected FSC histograms illustrating bimodal and monomodal distributions. x-axis displays the cha...
<p>Dashed line circles represent sample tissues (normal or tumor) and solid line circles represent t...