Tukey’s HSD post-hoc testing for differences in diversity between different tissue compartments across all PI animals using the E2 alignment.

<p>* p<0.05</p><p>Pairwise comparisons of between all tissues were performed following a significant one-way ANOVA analysis. Mean diversities were calculated for each compartment by taking the mean of the diversities for that compartment in each PI animal. Each animal was weighted equally regardless of the number of clones available for that individual.</p><p>Phylogenies were inferred for all animals sampled for both the gene fragments (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0131972#pone.0131972.g002" target="_blank">Fig 2</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0131972#pone.0131972.s002" target="_blank">S2</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0131972#pone.0131972.s003" target="_blank">S3</a> Figs). There is strong clustering of taxa by their tissue of origin as discussed below. However, there is generally low support for most internal branches and some recent ones which limits the conclusions that can be made based on these trees.</p><p>Tukey’s HSD post-hoc testing for differences in diversity between different tissue compartments across all PI animals using the E2 alignment.