Concordance of genotypes represented in VCF and gVCF files with those detected by the MI RISK Plus kit.

Genotype comparison.

Daria V. Zhernakova (102377)
Sergei Kliver (5504705)
Nikolay Cherkasov (1735498)
Gaik Tamazian (3460673)
Mikhail Rotkevich (5504717)
Ksenia Krasheninnikova (3460649)
Igor Evsyukov (3095229)
Sviatoslav Sidorov (5504714)
Pavel Dobrynin (2617393)
Andrey A. Yurchenko (3173334)
Valentin Shimansky (5504708)
Irina V. Shcherbakova (5504702)
Andrey S. Glotov (5504711)
David L. Valle (5504699)
Minzhong Tang (115845)
Emilia Shin (5504720)
Kathleen B. Schwarz (4019792)
Stephen J. O'Brien (53045)

July 2018

(A) Concordance of WGS genotypes with microarray genotypes. The concordance was estimated based o...

Genotype file (vcf)

Sarah E. Kingston (3608393)
Pieter Martino (5024525)
Marko Melendy (5024522)
Floyd A. Reed (185797)
David B. Carlon (475059)

March 2018

Variant call format genotypes file for SNP loci (322 mussels from the climate stress group)

VCF files describing the known mutations in each read file

Gavin Oliver (98327)

July 2012

VCF files describing the mutations contained in the sixty-seven groups of BRCA1 reads. These were...

Genotyping of GWAS catalog sites using the VCF and gVCF file formats and the number of homozygous reference sites and no-calls based on WGS data.

Alberto Ferrarini (133939)
Luciano Xumerle (765931)
Francesca Griggio (66872)
Marianna Garonzi (765932)
Chiara Cantaloni (765933)
Cesare Centomo (765934)
Sergio Marin Vargas (765935)
Patrick Descombes (16839)
Julien Marquis (765936)
Sebastiano Collino (385873)
Claudio Franceschi (68521)
Paolo Garagnani (414846)
Benjamin A. Salisbury (765937)
John Max Harvey (765938)
Massimo Delledonne (133941)

July 2015

Genotyping of GWAS catalog sites using the VCF and gVCF file formats and the number of homozygous...

Genetic data (filtered vcf file)

Lauren Lucas (3288597)
Chris Nice (5017265)
Zach Gompert (3191738)

March 2018

This text file contains the filtered genetic data (SNP set) in variant call format (vcf). This inclu...

SNP genotypes (VCF) files

Kay Lucek (299317)
Nora Hohmann (3282129)
Yvonne Willi (657152)

January 2019

Contains three genotype files (VCF) using either all twelve outcrossing populations, all eight selfi...

Genotyping of known SNPs from ClinVar using the VCF and gVCF file formats and the number of homozygous reference sites and no-calls based on WGS data.

Alberto Ferrarini (133939)
Luciano Xumerle (765931)
Francesca Griggio (66872)
Marianna Garonzi (765932)
Chiara Cantaloni (765933)
Cesare Centomo (765934)
Sergio Marin Vargas (765935)
Patrick Descombes (16839)
Julien Marquis (765936)
Sebastiano Collino (385873)
Claudio Franceschi (68521)
Paolo Garagnani (414846)
Benjamin A. Salisbury (765937)
John Max Harvey (765938)
Massimo Delledonne (133941)

July 2015

Genotyping of known SNPs from ClinVar using the VCF and gVCF file formats and the number of homoz...

Concordance of genotype calls between Kapa 2GFast HotStart DNA polymerase and QIAGEN Multiplex PCR Kit.

Nao Nishida (129644)
Yoriko Mawatari (156613)
Megumi Sageshima (156615)
Katsushi Tokunaga (46817)

January 2012

Concordance of genotype calls between Kapa 2GFast HotStart DNA polymerase and QIAGEN Multiplex PC...

Main vcf file with allele frequency estimates

Martin Kardos (3285978)
Gordon Luikart (2871419)
Rowan Bunch (3313518)
Sarah Dewey (3313512)
William Edwards (1770799)
Sean McWilliam (9473)
John Stephenson (3313515)
Fred W. Allendorf (108378)
John T. Hogg (3247221)
James Kijas (216935)

November 2016

vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...

Imputed and non imputed genotypes

Perez-Enciso, Miguel
de los Campos, Gustavo
Hudson, Nick
Kijas, James
Reverter, Antonio

July 2016

Sample list and characteristics, imputed and non imputed vcf files. "h2dom.tar.gz" contains 3 files:...

VCF file for SNPs used in GEMMA analysis

Alan Brelsford (571681)
David Toews (3250758)
Darren Irwin (3250761)

March 2018

Variant Call Format file (GZipped) for individuals used for genotype-phenotype associations. Sample ...

VCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available ancient samples.

Martiniano, Rui
Cassidy, Lara M.
Ó'Maoldúin, Ros
McLaughlin, Russell
Silva, Nuno M.
Manco, Licinio
Fidalgo, Daniel
Pereira, Tania
Coelho, Maria J.
Serra, Miguel
Burger, Joachim
Parreira, Rui
Moran, Elena
Valera, Antonio C.
Porfirio, Eduardo
Boaventura, Rui
Silva, Ana M.
Bradley, Daniel G.

July 2017

VCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available anc...

Chloephaga picta genotypes in .vcf format

Kopuchian, Cecilia
Campagna, Leonardo
Di Giacomo, Adrián S.
Wilson, Robert E.
Bulgarella, Mariana
Petracci, Pablo
Mazar Barnett, Juan
Matus, Ricardo
Blank, Olivia
McCracken, Kevin G.

April 2016

This is a .vcf file containing genotypes for Chloephaga picta at RAD loci. It was generated using th...

Genotype likelihoods, 32 912 SNPs

Lindtke, Dorothea
Gompert, Zachariah
Lexer, Christian
Buerkle, C. Alex

April 2014

Genotype likelihoods in vcf file format for the full data set including all 621 individuals

Genotyping of known SNPs from dbSNP 141 using the VCF and gVCF file formats and the number of homozygous reference sites and no-calls based on WGS data.

Alberto Ferrarini (133939)
Luciano Xumerle (765931)
Francesca Griggio (66872)
Marianna Garonzi (765932)
Chiara Cantaloni (765933)
Cesare Centomo (765934)
Sergio Marin Vargas (765935)
Patrick Descombes (16839)
Julien Marquis (765936)
Sebastiano Collino (385873)
Claudio Franceschi (68521)
Paolo Garagnani (414846)
Benjamin A. Salisbury (765937)
John Max Harvey (765938)
Massimo Delledonne (133941)

July 2015

Genotyping of known SNPs from dbSNP 141 using the VCF and gVCF file formats and the number of hom...

Genotype comparison.

Daria V. Zhernakova (102377)
Sergei Kliver (5504705)
Nikolay Cherkasov (1735498)
Gaik Tamazian (3460673)
Mikhail Rotkevich (5504717)
Ksenia Krasheninnikova (3460649)
Igor Evsyukov (3095229)
Sviatoslav Sidorov (5504714)
Pavel Dobrynin (2617393)
Andrey A. Yurchenko (3173334)
Valentin Shimansky (5504708)
Irina V. Shcherbakova (5504702)
Andrey S. Glotov (5504711)
David L. Valle (5504699)
Minzhong Tang (115845)
Emilia Shin (5504720)
Kathleen B. Schwarz (4019792)
Stephen J. O'Brien (53045)

July 2018

(A) Concordance of WGS genotypes with microarray genotypes. The concordance was estimated based o...

Genotype file (vcf)

Sarah E. Kingston (3608393)
Pieter Martino (5024525)
Marko Melendy (5024522)
Floyd A. Reed (185797)
David B. Carlon (475059)

March 2018

Variant call format genotypes file for SNP loci (322 mussels from the climate stress group)

VCF files describing the known mutations in each read file

Gavin Oliver (98327)

July 2012

VCF files describing the mutations contained in the sixty-seven groups of BRCA1 reads. These were...

Genotyping of GWAS catalog sites using the VCF and gVCF file formats and the number of homozygous reference sites and no-calls based on WGS data.

Alberto Ferrarini (133939)
Luciano Xumerle (765931)
Francesca Griggio (66872)
Marianna Garonzi (765932)
Chiara Cantaloni (765933)
Cesare Centomo (765934)
Sergio Marin Vargas (765935)
Patrick Descombes (16839)
Julien Marquis (765936)
Sebastiano Collino (385873)
Claudio Franceschi (68521)
Paolo Garagnani (414846)
Benjamin A. Salisbury (765937)
John Max Harvey (765938)
Massimo Delledonne (133941)

July 2015

Genotyping of GWAS catalog sites using the VCF and gVCF file formats and the number of homozygous...

Genetic data (filtered vcf file)

Lauren Lucas (3288597)
Chris Nice (5017265)
Zach Gompert (3191738)

March 2018

This text file contains the filtered genetic data (SNP set) in variant call format (vcf). This inclu...

SNP genotypes (VCF) files

Kay Lucek (299317)
Nora Hohmann (3282129)
Yvonne Willi (657152)

January 2019

Contains three genotype files (VCF) using either all twelve outcrossing populations, all eight selfi...

Genotyping of known SNPs from ClinVar using the VCF and gVCF file formats and the number of homozygous reference sites and no-calls based on WGS data.

Alberto Ferrarini (133939)
Luciano Xumerle (765931)
Francesca Griggio (66872)
Marianna Garonzi (765932)
Chiara Cantaloni (765933)
Cesare Centomo (765934)
Sergio Marin Vargas (765935)
Patrick Descombes (16839)
Julien Marquis (765936)
Sebastiano Collino (385873)
Claudio Franceschi (68521)
Paolo Garagnani (414846)
Benjamin A. Salisbury (765937)
John Max Harvey (765938)
Massimo Delledonne (133941)

July 2015

Genotyping of known SNPs from ClinVar using the VCF and gVCF file formats and the number of homoz...

Concordance of genotype calls between Kapa 2GFast HotStart DNA polymerase and QIAGEN Multiplex PCR Kit.

Nao Nishida (129644)
Yoriko Mawatari (156613)
Megumi Sageshima (156615)
Katsushi Tokunaga (46817)

January 2012

Concordance of genotype calls between Kapa 2GFast HotStart DNA polymerase and QIAGEN Multiplex PC...

Main vcf file with allele frequency estimates

Martin Kardos (3285978)
Gordon Luikart (2871419)
Rowan Bunch (3313518)
Sarah Dewey (3313512)
William Edwards (1770799)
Sean McWilliam (9473)
John Stephenson (3313515)
Fred W. Allendorf (108378)
John T. Hogg (3247221)
James Kijas (216935)

November 2016

vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...

Imputed and non imputed genotypes

Perez-Enciso, Miguel
de los Campos, Gustavo
Hudson, Nick
Kijas, James
Reverter, Antonio

July 2016

Sample list and characteristics, imputed and non imputed vcf files. "h2dom.tar.gz" contains 3 files:...

VCF file for SNPs used in GEMMA analysis

Alan Brelsford (571681)
David Toews (3250758)
Darren Irwin (3250761)

March 2018

Variant Call Format file (GZipped) for individuals used for genotype-phenotype associations. Sample ...

VCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available ancient samples.

Martiniano, Rui
Cassidy, Lara M.
Ó'Maoldúin, Ros
McLaughlin, Russell
Silva, Nuno M.
Manco, Licinio
Fidalgo, Daniel
Pereira, Tania
Coelho, Maria J.
Serra, Miguel
Burger, Joachim
Parreira, Rui
Moran, Elena
Valera, Antonio C.
Porfirio, Eduardo
Boaventura, Rui
Silva, Ana M.
Bradley, Daniel G.

July 2017

VCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available anc...

Chloephaga picta genotypes in .vcf format

Kopuchian, Cecilia
Campagna, Leonardo
Di Giacomo, Adrián S.
Wilson, Robert E.
Bulgarella, Mariana
Petracci, Pablo
Mazar Barnett, Juan
Matus, Ricardo
Blank, Olivia
McCracken, Kevin G.

April 2016

This is a .vcf file containing genotypes for Chloephaga picta at RAD loci. It was generated using th...

Genotype likelihoods, 32 912 SNPs

Lindtke, Dorothea
Gompert, Zachariah
Lexer, Christian
Buerkle, C. Alex

April 2014

Genotype likelihoods in vcf file format for the full data set including all 621 individuals

Genotyping of known SNPs from dbSNP 141 using the VCF and gVCF file formats and the number of homozygous reference sites and no-calls based on WGS data.

Alberto Ferrarini (133939)
Luciano Xumerle (765931)
Francesca Griggio (66872)
Marianna Garonzi (765932)
Chiara Cantaloni (765933)
Cesare Centomo (765934)
Sergio Marin Vargas (765935)
Patrick Descombes (16839)
Julien Marquis (765936)
Sebastiano Collino (385873)
Claudio Franceschi (68521)
Paolo Garagnani (414846)
Benjamin A. Salisbury (765937)
John Max Harvey (765938)
Massimo Delledonne (133941)

July 2015

Genotyping of known SNPs from dbSNP 141 using the VCF and gVCF file formats and the number of hom...

Genotype comparison.

Daria V. Zhernakova (102377)
Sergei Kliver (5504705)
Nikolay Cherkasov (1735498)
Gaik Tamazian (3460673)
Mikhail Rotkevich (5504717)
Ksenia Krasheninnikova (3460649)
Igor Evsyukov (3095229)
Sviatoslav Sidorov (5504714)
Pavel Dobrynin (2617393)
Andrey A. Yurchenko (3173334)
Valentin Shimansky (5504708)
Irina V. Shcherbakova (5504702)
Andrey S. Glotov (5504711)
David L. Valle (5504699)
Minzhong Tang (115845)
Emilia Shin (5504720)
Kathleen B. Schwarz (4019792)
Stephen J. O'Brien (53045)

July 2018

(A) Concordance of WGS genotypes with microarray genotypes. The concordance was estimated based o...

Genotype file (vcf)

Sarah E. Kingston (3608393)
Pieter Martino (5024525)
Marko Melendy (5024522)
Floyd A. Reed (185797)
David B. Carlon (475059)

March 2018

Variant call format genotypes file for SNP loci (322 mussels from the climate stress group)

VCF files describing the known mutations in each read file

Gavin Oliver (98327)

July 2012

VCF files describing the mutations contained in the sixty-seven groups of BRCA1 reads. These were...

Concordance of genotypes represented in VCF and gVCF files with those detected by the MI RISK Plus kit.

Abstract

Extracted data

Concordance of genotypes represented in VCF and gVCF files with those detected by the MI RISK Plus kit.

Abstract

Extracted data

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