Genome-wide map of the genes up- and down-regulated, and highly reduced RNAP binding in <i>rpoA</i>^<i>del</i>-expressing cells (at 3 hours).

<p>From the outermost ring, the genes with highly reduced RNAP binding identified by ChAP-chip analysis (dark-blue bars, gene names corresponding to those bars are indicated by dark-blue letters outside of rings), down-regulated genes identified by transcriptome analysis (sky-blue bars, gene names corresponding to those bars are indicated by sky-blue letters outside of rings), CDSs (orange bars, an outer and inner ring indicates clockwise and counterclockwise CDSs, respectively) and up-regulated genes identified by transcriptome analysis (red bars in innermost ring, gene names corresponding to those bars are indicated by red letters) are shown as bars at their corresponding genome coordinates. The pink letters indicate the genes which were identified as the genes both down-regulated and with highly reduced RNAP binding. The GenomeMatcher was used to draw rings [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0131588#pone.0131588.ref040" target="_blank">40</a>].