<p>*Denotes the nearest annotated gene to the discovered binding site, rather than an overlapping annotated gene.</p><p>The top 100 significantly different annotated regions from among 271 identified via RIP-Seq are given along with the total number of significant ‘hits’ (binding events) at that region among two independent RIP experiments. Fold denotes the <i>minimum</i> fold change observed across all of the hits, where fold change is expressed as (HuR/IgG). All regions given in this table have a <i>minimum</i> q-value (false discovery rate value based on method of Benjamini-Hochberg) <1E-99 from testing for HuR binding to RNA. The regions are arranged by gene type, and then sorted by fold change. Location of binding overlaps the annotate...
<p>A. Plots of linkage disequilibrium (<i>r</i><sup>2</sup>) with distance between polymorphic nucle...
<p>Identification and ranking of differentially expressed genes (DEGs) from individual studies using...
Motivation: Post-transcriptional and co-transcriptional regulation is a crucial link between genotyp...
<p>*Denotes the nearest annotated gene to the discovered binding site, rather than an overlapping an...
<p>The official symbol of the top 50 (significant) genes found via RNA-Seq are given, along with fol...
<p>Gene dense regions tend to contain more binding events (peaks) than gene sparse regions of the ge...
<p>The set of conserved binding site eroding loci (CoBELs) for each individual is searched for the m...
<p>RNA binding proteins (RBPs) and non-coding RNAs orchestrate gene expression in part through the r...
<p>(A) Proportion of reads with a unique match to known genes (left), or known genes supplemented wi...
<p><b>A</b>) Distribution of genes confirmed by the four RNAi studies designated as DL1, U2OS, A549<...
<p>A total of 84 significantly upregulated genes after trypsin puncture wounding were manually class...
<p>Size indicates the number of molecules that comprise a pathway and DE indicates the number of sig...
<p>The ratio (the percentage of genes in the overlap between the 678 DEGs and the MSigDB gene set), ...
<p>Percentages are the proportion of tumors having a mutation within a subtype, e.g. 37% of Bronchio...
Chromatin immunoprecipitation (ChIP) followed by high throughput sequencing (ChIP-seq) is rapidly be...
<p>A. Plots of linkage disequilibrium (<i>r</i><sup>2</sup>) with distance between polymorphic nucle...
<p>Identification and ranking of differentially expressed genes (DEGs) from individual studies using...
Motivation: Post-transcriptional and co-transcriptional regulation is a crucial link between genotyp...
<p>*Denotes the nearest annotated gene to the discovered binding site, rather than an overlapping an...
<p>The official symbol of the top 50 (significant) genes found via RNA-Seq are given, along with fol...
<p>Gene dense regions tend to contain more binding events (peaks) than gene sparse regions of the ge...
<p>The set of conserved binding site eroding loci (CoBELs) for each individual is searched for the m...
<p>RNA binding proteins (RBPs) and non-coding RNAs orchestrate gene expression in part through the r...
<p>(A) Proportion of reads with a unique match to known genes (left), or known genes supplemented wi...
<p><b>A</b>) Distribution of genes confirmed by the four RNAi studies designated as DL1, U2OS, A549<...
<p>A total of 84 significantly upregulated genes after trypsin puncture wounding were manually class...
<p>Size indicates the number of molecules that comprise a pathway and DE indicates the number of sig...
<p>The ratio (the percentage of genes in the overlap between the 678 DEGs and the MSigDB gene set), ...
<p>Percentages are the proportion of tumors having a mutation within a subtype, e.g. 37% of Bronchio...
Chromatin immunoprecipitation (ChIP) followed by high throughput sequencing (ChIP-seq) is rapidly be...
<p>A. Plots of linkage disequilibrium (<i>r</i><sup>2</sup>) with distance between polymorphic nucle...
<p>Identification and ranking of differentially expressed genes (DEGs) from individual studies using...
Motivation: Post-transcriptional and co-transcriptional regulation is a crucial link between genotyp...