Additional file 5: Figure S2. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Additional file 2: of Proteomic profiling identifies specific histone species associated with leukemic and cancer cells

Rajbir Singh (451210)
Sean Harshman (3498065)
Amy Ruppert (3498059)
Amir Mortazavi (1939456)
David Lucas (3486539)
Jennifer Thomas-Ahner (3498062)
Steven Clinton (3498056)
John Byrd (28558)
Michael Freitas (3460514)
Mark Parthun (3460520)

August 2015

Figure S1. A schematic diagram of the method used to quantitate histone proteomics in tumor samples....

Additional file 5: of Genomic analyses based on pulmonary adenocarcinoma in situ reveal early lung cancer signature

Dan Li (106345)
William Yang (3523358)
Yifan Zhang (119570)
Jack Yang (1972336)
Renchu Guan (633863)
Dong Xu (21616)
Mary Yang (4724700)

November 2018

Table S3. List of the 20 early lung cancer signature genes and their cancer related functions. (XLSX...

Figure_S2_xyz153707f6923ef – Supplemental material for A Pathway-Based Strategy to Identify Biomarkers for Lung Cancer Diagnosis and Prognosis

Mengying Sheng (6501197)
Xueying Xie (410060)
Jun Wang (5906)
Wanjun Gu (123093)

March 2019

Supplemental material, Figure_S2_xyz153707f6923ef for A Pathway-Based Strategy to Identify Biomarker...

Additional file 4: Figure S1. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Panther-based classification of protein class for candidate lung cancer markers (nâ=â179)

Additional file 6: Figure S3. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Panther-based classification of protein pathways comparing lung cancer markers identified in tissues...

Additional file 1: Table S1. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Demographics and clinical profiles for subjects selected for fresh tissue discovery study

Additional file 3: Table S3. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Candidate lung cancer biomarkers (nâ=â179) identified through LC/MS analysis

Additional file 7: Figure S4. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Expression levels of biomarker candidates in serum collected from patients with NSCLC (nâ=â94) a...

Additional file 1 of Quantitative proteomics identified circulating biomarkers in lung adenocarcinoma diagnosis

Hongyu Chen (105612)
Xiaoqin Lai (14148899)
Yihan Zhu (1333899)
Hong Huang (119275)
Lingyan Zeng (1414378)
Li Zhang (8200)

November 2022

Additional file 1: Table S1. Differentially expressed proteins identified in plasma samples

Additional file 5: of Prediction of response to pemetrexed in non-small-cell lung cancer with immunohistochemical phenotyping based on gene expression profiles

S. Visser (6701171)
J. Hou (6701174)
K. Bezemer (6701177)
L. Vogel (6701180)
J. Hegmans (6701183)
B. Stricker (6701186)
S. Philipsen (6701189)
J. Aerts (4766385)

May 2019

Figure S2. Scatter plots of gene expression levels of selected molecular markers with their protein ...

Additional file 1: of Levels and prognostic impact of circulating markers of inflammation, endothelial activation and extracellular matrix remodelling in patients with lung cancer and chronic obstructive pulmonary disease

Janna Berg (5515091)
Ann Halvorsen (3415001)
May-Bente Bengtson (5515097)
Kristin TaskĂŠn (5515100)
Gunhild MĂŚlandsmo (5515103)
Arne Yndestad (224387)
Bente Halvorsen (151367)
Odd Brustugun (3415010)
PĂĽl Aukrust (3567137)
Thor Ueland (307058)
Ăslaug Helland (5049539)

July 2018

Table S1. Serum protein levels. All data from the serum analyses are presented. This includes result...

Additional file 2: of PHD-finger domain protein 5A functions as a novel oncoprotein in lung adenocarcinoma

Yan Yang (33204)
Jian Zhu (126278)
Tiantian Zhang (480352)
Jing Liu (38537)
Yumei Li (380798)
Yue Zhu (306128)
Lingjie Xu (319088)
Rui Wang (52434)
Fang Su (487340)
Yurong Ou (4996652)
Qiong Wu (84327)

March 2018

Figure S1. PHF5A expression in human tissue microarrays containing LAC tissues and adjacent non-tumo...

Additional file 5: of Computational analysis reveals histotype-dependent molecular profile and actionable mutation effects across cancers

Daniel Heim (2298175)
GrĂŠgoire Montavon (5980835)
Peter Hufnagl (5980832)
Klaus-Robert MĂźller (5980838)
Frederick Klauschen (110645)

November 2018

Cell lines analysis results. Two tables containing results on cell line data analysis. (XLSX 14 kb

Additional file 5: Figure S2. of Combinatory effect of BRCA1 and HERC2 expression on outcome in advanced non-small-cell lung cancer

Laura Bonanno (3524183)
Carlota Costa (252304)
Margarita Majem (3524192)
Jose-Javier Sanchez (3524186)
Ignacio Rodriguez (3524174)
Ana Gimenez-Capitan (252311)
Miquel Molina-Vila (3524171)
Alain Vergnenegre (3524195)
Bartomeu Massuti (3524189)
Adolfo Favaretto (3524177)
Massimo Rugge (221868)
Cinta Pallares (3524180)
Miquel Taron (145434)
Rafael Rosell (145450)

May 2016

The effect of HERC2 mRNA expression on the outcome of patients expressing high levels of BRCA1. (DOC...

Additional file 1: of Diagnostic role of circulating extracellular matrix-related proteins in non-small cell lung cancer

Francesca Andriani (4987880)
Elena Landoni (3399467)
Mavis Mensah (4987874)
Federica Facchinetti (4987877)
Rosalba Miceli (545436)
Elda Tagliabue (222687)
Marta Giussani (5767259)
Maurizio Callari (107071)
Loris De Cecco (107073)
Mario Colombo (5767262)
Luca Roz (4987883)
Ugo Pastorino (440075)
Gabriella Sozzi (371979)

September 2018

Table S1. Quantile regression multivariable analysis of association between COL11A1 and COL10A1 leve...

Additional file 2: of Proteomic profiling identifies specific histone species associated with leukemic and cancer cells

Rajbir Singh (451210)
Sean Harshman (3498065)
Amy Ruppert (3498059)
Amir Mortazavi (1939456)
David Lucas (3486539)
Jennifer Thomas-Ahner (3498062)
Steven Clinton (3498056)
John Byrd (28558)
Michael Freitas (3460514)
Mark Parthun (3460520)

August 2015

Figure S1. A schematic diagram of the method used to quantitate histone proteomics in tumor samples....

Additional file 5: of Genomic analyses based on pulmonary adenocarcinoma in situ reveal early lung cancer signature

Dan Li (106345)
William Yang (3523358)
Yifan Zhang (119570)
Jack Yang (1972336)
Renchu Guan (633863)
Dong Xu (21616)
Mary Yang (4724700)

November 2018

Table S3. List of the 20 early lung cancer signature genes and their cancer related functions. (XLSX...

Figure_S2_xyz153707f6923ef – Supplemental material for A Pathway-Based Strategy to Identify Biomarkers for Lung Cancer Diagnosis and Prognosis

Mengying Sheng (6501197)
Xueying Xie (410060)
Jun Wang (5906)
Wanjun Gu (123093)

March 2019

Supplemental material, Figure_S2_xyz153707f6923ef for A Pathway-Based Strategy to Identify Biomarker...

Additional file 4: Figure S1. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Panther-based classification of protein class for candidate lung cancer markers (nâ=â179)

Additional file 6: Figure S3. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Panther-based classification of protein pathways comparing lung cancer markers identified in tissues...

Additional file 1: Table S1. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Demographics and clinical profiles for subjects selected for fresh tissue discovery study

Additional file 3: Table S3. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Candidate lung cancer biomarkers (nâ=â179) identified through LC/MS analysis

Additional file 7: Figure S4. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Charles Birse (3420953)
Robert Lagier (3420938)
William FitzHugh (484022)
Harvey Pass (202310)
William Rom (2400067)
Eric Edell (3420962)
Aaron Bungum (3420959)
Fabien Maldonado (544207)
James Jett (3420956)
Mehdi Mesri (484015)
Erin Sult (3420947)
Elizabeth Joseloff (1342536)
Aiqun Li (289891)
Jenny Heidbrink (484017)
Gulshan Dhariwal (3420941)
Chad Danis (3420950)
Jennifer Tomic (3420965)
Robert Bruce (2019028)
Paul Moore (469661)
Tao He (23919)
Marcia Lewis (3420944)
Steve Ruben (484023)

July 2015

Expression levels of biomarker candidates in serum collected from patients with NSCLC (nâ=â94) a...

Additional file 1 of Quantitative proteomics identified circulating biomarkers in lung adenocarcinoma diagnosis

Hongyu Chen (105612)
Xiaoqin Lai (14148899)
Yihan Zhu (1333899)
Hong Huang (119275)
Lingyan Zeng (1414378)
Li Zhang (8200)

November 2022

Additional file 1: Table S1. Differentially expressed proteins identified in plasma samples

Additional file 5: of Prediction of response to pemetrexed in non-small-cell lung cancer with immunohistochemical phenotyping based on gene expression profiles

S. Visser (6701171)
J. Hou (6701174)
K. Bezemer (6701177)
L. Vogel (6701180)
J. Hegmans (6701183)
B. Stricker (6701186)
S. Philipsen (6701189)
J. Aerts (4766385)

May 2019

Figure S2. Scatter plots of gene expression levels of selected molecular markers with their protein ...

Additional file 1: of Levels and prognostic impact of circulating markers of inflammation, endothelial activation and extracellular matrix remodelling in patients with lung cancer and chronic obstructive pulmonary disease

Janna Berg (5515091)
Ann Halvorsen (3415001)
May-Bente Bengtson (5515097)
Kristin TaskĂŠn (5515100)
Gunhild MĂŚlandsmo (5515103)
Arne Yndestad (224387)
Bente Halvorsen (151367)
Odd Brustugun (3415010)
PĂĽl Aukrust (3567137)
Thor Ueland (307058)
Ăslaug Helland (5049539)

July 2018

Table S1. Serum protein levels. All data from the serum analyses are presented. This includes result...

Additional file 2: of PHD-finger domain protein 5A functions as a novel oncoprotein in lung adenocarcinoma

Yan Yang (33204)
Jian Zhu (126278)
Tiantian Zhang (480352)
Jing Liu (38537)
Yumei Li (380798)
Yue Zhu (306128)
Lingjie Xu (319088)
Rui Wang (52434)
Fang Su (487340)
Yurong Ou (4996652)
Qiong Wu (84327)

March 2018

Figure S1. PHF5A expression in human tissue microarrays containing LAC tissues and adjacent non-tumo...

Additional file 5: of Computational analysis reveals histotype-dependent molecular profile and actionable mutation effects across cancers

Daniel Heim (2298175)
GrĂŠgoire Montavon (5980835)
Peter Hufnagl (5980832)
Klaus-Robert MĂźller (5980838)
Frederick Klauschen (110645)

November 2018

Cell lines analysis results. Two tables containing results on cell line data analysis. (XLSX 14 kb

Additional file 5: Figure S2. of Combinatory effect of BRCA1 and HERC2 expression on outcome in advanced non-small-cell lung cancer

Laura Bonanno (3524183)
Carlota Costa (252304)
Margarita Majem (3524192)
Jose-Javier Sanchez (3524186)
Ignacio Rodriguez (3524174)
Ana Gimenez-Capitan (252311)
Miquel Molina-Vila (3524171)
Alain Vergnenegre (3524195)
Bartomeu Massuti (3524189)
Adolfo Favaretto (3524177)
Massimo Rugge (221868)
Cinta Pallares (3524180)
Miquel Taron (145434)
Rafael Rosell (145450)

May 2016

The effect of HERC2 mRNA expression on the outcome of patients expressing high levels of BRCA1. (DOC...

Additional file 1: of Diagnostic role of circulating extracellular matrix-related proteins in non-small cell lung cancer

Francesca Andriani (4987880)
Elena Landoni (3399467)
Mavis Mensah (4987874)
Federica Facchinetti (4987877)
Rosalba Miceli (545436)
Elda Tagliabue (222687)
Marta Giussani (5767259)
Maurizio Callari (107071)
Loris De Cecco (107073)
Mario Colombo (5767262)
Luca Roz (4987883)
Ugo Pastorino (440075)
Gabriella Sozzi (371979)

September 2018

Table S1. Quantile regression multivariable analysis of association between COL11A1 and COL10A1 leve...

Additional file 2: of Proteomic profiling identifies specific histone species associated with leukemic and cancer cells

Rajbir Singh (451210)
Sean Harshman (3498065)
Amy Ruppert (3498059)
Amir Mortazavi (1939456)
David Lucas (3486539)
Jennifer Thomas-Ahner (3498062)
Steven Clinton (3498056)
John Byrd (28558)
Michael Freitas (3460514)
Mark Parthun (3460520)

August 2015

Figure S1. A schematic diagram of the method used to quantitate histone proteomics in tumor samples....

Additional file 5: of Genomic analyses based on pulmonary adenocarcinoma in situ reveal early lung cancer signature

Dan Li (106345)
William Yang (3523358)
Yifan Zhang (119570)
Jack Yang (1972336)
Renchu Guan (633863)
Dong Xu (21616)
Mary Yang (4724700)

November 2018

Table S3. List of the 20 early lung cancer signature genes and their cancer related functions. (XLSX...

Figure_S2_xyz153707f6923ef – Supplemental material for A Pathway-Based Strategy to Identify Biomarkers for Lung Cancer Diagnosis and Prognosis

Mengying Sheng (6501197)
Xueying Xie (410060)
Jun Wang (5906)
Wanjun Gu (123093)

March 2019

Supplemental material, Figure_S2_xyz153707f6923ef for A Pathway-Based Strategy to Identify Biomarker...

Additional file 5: Figure S2. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Abstract

Extracted data

Additional file 5: Figure S2. of Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium

Abstract

Extracted data

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