FPKM quantitation of minicircle steady state transcripts.

Real-time PCR validation of candidate unigenes involved in the CPP biosynthesis by RNA-seq.

Jian Ping Gao (696314)
Dong Wang (73290)
Ling Ya Cao (696315)
Hai Feng Sun (696316)

February 2015

Relative expression dataset obtained by real-time PCR was marked with column chart. FPKM, per mil...

The level of gene expression for each gene (a: sample 2-1, b: sample 4-1, c: sample 6-1).

Yuanmin Zhu (422861)
Pengpeng Zhou (422862)
Jingrong Hu (422863)
Ruijiao Zhang (422864)
Liang Ren (422865)
Maoteng Li (417063)
Fan Ning (422866)
Wei Chen (23863)
Longjiang Yu (422867)

June 2013

Gene expression level was determined by calculating the number of unambiguous tags for each gene ...

Relationship of transcript levels in early development and low mutagenesis efficiency.

Meri I. E. Uusi-Mäkelä (5130965)
Harlan R. Barker (776371)
Carina A. Bäuerlein (107748)
Tomi Häkkinen (5130962)
Matti Nykter (21557)
Mika Rämet (133146)

April 2018

Pie charts of the RNA-seq data corresponding to graphs in <a href="http://www.plosone.org/article...

FPKM quantitation of minicircle steady state transcripts.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

Percent expression of steady state total minicircle transcripts compared to percent of LEM125 min...

FPKM quantitation of minicircle steady state transcripts.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

LEM125 and UC steady state gRNA transcripts as percentage of total steady state gRNA transcripts....

FPKM quantitation of minicircle steady state transcripts.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

LEM125 (light red) and UC (blue) minicircle steady state transcripts as percentage of total minic...

Relative expression of gene candidates identified in khat (CED-Trinity).

Ryan A. Groves (711546)
Jillian M. Hagel (711547)
Ye Zhang (132223)
Korey Kilpatrick (711548)
Asaf Levy (258177)
Frédéric Marsolais (415650)
Efraim Lewinsohn (453430)
Christoph W. Sensen (252936)
Peter J. Facchini (711549)

March 2015

FPKM (fragments mapped per kilobase of exon per million reads mapped) is a normalizing statistic ...

UC total minicircle RNA reads divided by minicircle copy number per network.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

See <a href="http://www.plosntds.org/article/info:doi/10.1371/journal.pntd.0003841#pntd.0003841.g...

LEM125 total minicircle RNA reads divided by minicircle copy number per network.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

See <a href="http://www.plosntds.org/article/info:doi/10.1371/journal.pntd.0003841#pntd.0003841.g...

Global analysis of mRNA and protein expression levels.

Haythem Latif (407100)
Joshua A. Lerman (407101)
Vasiliy A. Portnoy (407102)
Yekaterina Tarasova (407103)
Harish Nagarajan (143430)
Alexandra C. Schrimpe-Rutledge (175335)
Richard D. Smith (39311)
Joshua N. Adkins (39312)
Dae-Hee Lee (200735)
Yu Qiu (143428)
Karsten Zengler (247723)

April 2013

(A) The fraction of transcribed genes as a function of the FPKM threshold. Under growth promoting...

Plot showing the magnitude of FPKM gene expression in rRNA-depleted total RNA in pair-wise comparisons between sample S1 and sample S2.

Antheia Kissopoulou (495666)
Jon Jonasson (495667)
Tomas L. Lindahl (495668)
Abdimajid Osman (495669)

December 2013

Each dot represents a S1/S2 pair for a gene that had detectable expression in both samples. Pears...

The protein/RNA/DNA ratios used for specifying the scale parameters in a stochastic network were measured and reported below.

C. Caranica (5227568)
A. Al-Omari (5227559)
Z. Deng (5227574)
J. Griffith (5227565)
R. Nilsen (5227562)
L. Mao (4753953)
J. Arnold (3972494)
H.-B. Schüttler (5227571)

May 2018

For each of 13 evenly spaced time points over 48 hours, a sample was taken. A commercial kit was ...

Scatter plots of minicircle steady state RNA versus minicircle copy number for LEM and UC strains.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

Each minicircle shown in blue with fit line in pink. R = 0.62 for LEM, R = 0.50 for UC.</p

Summaries of sequenced small RNAs.

Leopold Parts (144647)
Åsa K. Hedman (3663025)
Sarah Keildson (149896)
Andrew J. Knights (166771)
Cei Abreu-Goodger (10072)
Martijn van de Bunt (166776)
José Afonso Guerra-Assunção (166779)
Nenad Bartonicek (142034)
Stijn van Dongen (14147)
Reedik Mägi (667294)
James Nisbet (166782)
Amy Barrett (166784)
Mattias Rantalainen (166786)
Alexandra C. Nica (166789)
Michael A. Quail (166793)
Kerrin S. Small (166800)
Daniel Glass (160849)
Anton J. Enright (14148)
John Winn (166812)
Panos Deloukas (21564)
Emmanouil T. Dermitzakis (120302)
Mark I. McCarthy (145748)
Timothy D. Spector (110281)
Richard Durbin (2217)
Cecilia M. Lindgren (145706)

May 2012

A. Cumulative number of different small RNA species recovered at required minimum coverage of 100...

Transcriptome sequencing data of tier 1 mutations.

Iacopo Petrini (399949)
Arun Rajan (399950)
Trung Pham (216509)
Donna Voeller (399951)
Sean Davis (15957)
James Gao (51601)
Yisong Wang (59093)
Giuseppe Giaccone (62965)

April 2013

The expression of tier1 genes was estimated using Transcriptome sequencing data. For each gene, i...

Real-time PCR validation of candidate unigenes involved in the CPP biosynthesis by RNA-seq.

Jian Ping Gao (696314)
Dong Wang (73290)
Ling Ya Cao (696315)
Hai Feng Sun (696316)

February 2015

Relative expression dataset obtained by real-time PCR was marked with column chart. FPKM, per mil...

The level of gene expression for each gene (a: sample 2-1, b: sample 4-1, c: sample 6-1).

Yuanmin Zhu (422861)
Pengpeng Zhou (422862)
Jingrong Hu (422863)
Ruijiao Zhang (422864)
Liang Ren (422865)
Maoteng Li (417063)
Fan Ning (422866)
Wei Chen (23863)
Longjiang Yu (422867)

June 2013

Gene expression level was determined by calculating the number of unambiguous tags for each gene ...

Relationship of transcript levels in early development and low mutagenesis efficiency.

Meri I. E. Uusi-Mäkelä (5130965)
Harlan R. Barker (776371)
Carina A. Bäuerlein (107748)
Tomi Häkkinen (5130962)
Matti Nykter (21557)
Mika Rämet (133146)

April 2018

Pie charts of the RNA-seq data corresponding to graphs in <a href="http://www.plosone.org/article...

FPKM quantitation of minicircle steady state transcripts.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

Percent expression of steady state total minicircle transcripts compared to percent of LEM125 min...

FPKM quantitation of minicircle steady state transcripts.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

LEM125 and UC steady state gRNA transcripts as percentage of total steady state gRNA transcripts....

FPKM quantitation of minicircle steady state transcripts.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

LEM125 (light red) and UC (blue) minicircle steady state transcripts as percentage of total minic...

Relative expression of gene candidates identified in khat (CED-Trinity).

Ryan A. Groves (711546)
Jillian M. Hagel (711547)
Ye Zhang (132223)
Korey Kilpatrick (711548)
Asaf Levy (258177)
Frédéric Marsolais (415650)
Efraim Lewinsohn (453430)
Christoph W. Sensen (252936)
Peter J. Facchini (711549)

March 2015

FPKM (fragments mapped per kilobase of exon per million reads mapped) is a normalizing statistic ...

UC total minicircle RNA reads divided by minicircle copy number per network.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

See <a href="http://www.plosntds.org/article/info:doi/10.1371/journal.pntd.0003841#pntd.0003841.g...

LEM125 total minicircle RNA reads divided by minicircle copy number per network.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

See <a href="http://www.plosntds.org/article/info:doi/10.1371/journal.pntd.0003841#pntd.0003841.g...

Global analysis of mRNA and protein expression levels.

Haythem Latif (407100)
Joshua A. Lerman (407101)
Vasiliy A. Portnoy (407102)
Yekaterina Tarasova (407103)
Harish Nagarajan (143430)
Alexandra C. Schrimpe-Rutledge (175335)
Richard D. Smith (39311)
Joshua N. Adkins (39312)
Dae-Hee Lee (200735)
Yu Qiu (143428)
Karsten Zengler (247723)

April 2013

(A) The fraction of transcribed genes as a function of the FPKM threshold. Under growth promoting...

Plot showing the magnitude of FPKM gene expression in rRNA-depleted total RNA in pair-wise comparisons between sample S1 and sample S2.

Antheia Kissopoulou (495666)
Jon Jonasson (495667)
Tomas L. Lindahl (495668)
Abdimajid Osman (495669)

December 2013

Each dot represents a S1/S2 pair for a gene that had detectable expression in both samples. Pears...

The protein/RNA/DNA ratios used for specifying the scale parameters in a stochastic network were measured and reported below.

C. Caranica (5227568)
A. Al-Omari (5227559)
Z. Deng (5227574)
J. Griffith (5227565)
R. Nilsen (5227562)
L. Mao (4753953)
J. Arnold (3972494)
H.-B. Schüttler (5227571)

May 2018

For each of 13 evenly spaced time points over 48 hours, a sample was taken. A commercial kit was ...

Scatter plots of minicircle steady state RNA versus minicircle copy number for LEM and UC strains.

Larry Simpson (774451)
Stephen M. Douglass (774452)
James A. Lake (774453)
Matteo Pellegrini (2078)
Feng Li (30515)

July 2015

Each minicircle shown in blue with fit line in pink. R = 0.62 for LEM, R = 0.50 for UC.</p

Summaries of sequenced small RNAs.

Leopold Parts (144647)
Åsa K. Hedman (3663025)
Sarah Keildson (149896)
Andrew J. Knights (166771)
Cei Abreu-Goodger (10072)
Martijn van de Bunt (166776)
José Afonso Guerra-Assunção (166779)
Nenad Bartonicek (142034)
Stijn van Dongen (14147)
Reedik Mägi (667294)
James Nisbet (166782)
Amy Barrett (166784)
Mattias Rantalainen (166786)
Alexandra C. Nica (166789)
Michael A. Quail (166793)
Kerrin S. Small (166800)
Daniel Glass (160849)
Anton J. Enright (14148)
John Winn (166812)
Panos Deloukas (21564)
Emmanouil T. Dermitzakis (120302)
Mark I. McCarthy (145748)
Timothy D. Spector (110281)
Richard Durbin (2217)
Cecilia M. Lindgren (145706)

May 2012

A. Cumulative number of different small RNA species recovered at required minimum coverage of 100...

Transcriptome sequencing data of tier 1 mutations.

Iacopo Petrini (399949)
Arun Rajan (399950)
Trung Pham (216509)
Donna Voeller (399951)
Sean Davis (15957)
James Gao (51601)
Yisong Wang (59093)
Giuseppe Giaccone (62965)

April 2013

The expression of tier1 genes was estimated using Transcriptome sequencing data. For each gene, i...

Real-time PCR validation of candidate unigenes involved in the CPP biosynthesis by RNA-seq.

Jian Ping Gao (696314)
Dong Wang (73290)
Ling Ya Cao (696315)
Hai Feng Sun (696316)

February 2015

Relative expression dataset obtained by real-time PCR was marked with column chart. FPKM, per mil...

The level of gene expression for each gene (a: sample 2-1, b: sample 4-1, c: sample 6-1).

Yuanmin Zhu (422861)
Pengpeng Zhou (422862)
Jingrong Hu (422863)
Ruijiao Zhang (422864)
Liang Ren (422865)
Maoteng Li (417063)
Fan Ning (422866)
Wei Chen (23863)
Longjiang Yu (422867)

June 2013

Gene expression level was determined by calculating the number of unambiguous tags for each gene ...

Relationship of transcript levels in early development and low mutagenesis efficiency.

Meri I. E. Uusi-Mäkelä (5130965)
Harlan R. Barker (776371)
Carina A. Bäuerlein (107748)
Tomi Häkkinen (5130962)
Matti Nykter (21557)
Mika Rämet (133146)

April 2018

Pie charts of the RNA-seq data corresponding to graphs in <a href="http://www.plosone.org/article...

FPKM quantitation of minicircle steady state transcripts.

Abstract

Extracted data

FPKM quantitation of minicircle steady state transcripts.

Abstract

Extracted data

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