<p>Each ligand is colored by atom type (carbon and hydrogen: light grey; nitrogen: blue; oxygen: red; chloro: green; phosphorus: orange; sulphur: yellow) and displays its name and PDB identification (PDB ID). The dashed circle represents the rotatable bounds selected by AutoDockTools 1.5.6. Ligand Abbreviations: <b>TCL</b>: triclosan; <b>665:</b>(3S) N-(3-bromophenyl)-1-cyclohexyl-5-oxopyrrolidine- 3-carboxamide; <b>566:</b>(3S)-1-cyclohexyl-5-oxo-N-phenyl pyrrolidine-3-carboxamide; <b>8PC:</b> 2-(2,4-dichloro-phenoxy)-5-(pyridin-2-ylmethyl)phenol; <b>JPJ:</b> 2-(2,4-dichlorophenoxy)-5-(2-phenylethyl)phenol; <b>JPL:</b> 5-(cyclohexa-1,5-dien-1-ylmethyl)-2-(2,4-dichlorophenoxy) phenol; <b>JPM:</b> 5-benzyl-2-(2,4-dichloropheno-xy)phenol; <b>...
Left column: visualization of the NS3-4A protease structure and surface of the binding pocket of wi...
<p>Ligplots of the compounds in binding pocket of PbICL. Pink circles indicate residues involved in ...
<p>(A) Interaction between PDE4 and compound 1 as predicted by molecular docking. (B) Interaction be...
<p>A. Comparison of top ranked pose obtained from molecular docking (yellow) with the crystallograph...
<p>Top left: Experimental structure of PDB: 1IUP, coded as CSAR datapoint ‘set1_120’. Waters (Oxygen...
(A) Docking results of beta sitosterol targeting AKT2; (B) Docking results of beta sitosterol target...
<p><b>a-d)</b> Docking poses for <b>8</b>−<b>11</b> the 5-HT<sub>2B</sub> crystal structure. <b>8</b...
<p>Active site residues are shown in stick form. PD00519 and compound 1 are color-coded: green – PD0...
<p>(A) Coproporphyrinogen III (B) isopraeroside IV (C) scopolin (D) nodakenin. Orange solid lines an...
<p>(A) Aurantiamide, (B) cnidiadin,(C) 2-hexadecenoic acid, and (D) Orlistat. Residues on which inte...
Alignments of high-scoring binding site pairs of the Barelier data set generated by (A) Cavbase, (B)...
<p>(A) Docking results overview, highlighting residues involved in binding interactions; Cut-through...
<p>(A) 2D molecular docking modeling of compound <b>C6</b> with 3PSD. (B) 3D model of the interactio...
<p><b>Copyright information:</b></p><p>Taken from "Setting up a large set of protein-ligand PDB comp...
<p>(A) Average pocket and ligand profiles of cluster a are represented on star plot. Dashed lines re...
Left column: visualization of the NS3-4A protease structure and surface of the binding pocket of wi...
<p>Ligplots of the compounds in binding pocket of PbICL. Pink circles indicate residues involved in ...
<p>(A) Interaction between PDE4 and compound 1 as predicted by molecular docking. (B) Interaction be...
<p>A. Comparison of top ranked pose obtained from molecular docking (yellow) with the crystallograph...
<p>Top left: Experimental structure of PDB: 1IUP, coded as CSAR datapoint ‘set1_120’. Waters (Oxygen...
(A) Docking results of beta sitosterol targeting AKT2; (B) Docking results of beta sitosterol target...
<p><b>a-d)</b> Docking poses for <b>8</b>−<b>11</b> the 5-HT<sub>2B</sub> crystal structure. <b>8</b...
<p>Active site residues are shown in stick form. PD00519 and compound 1 are color-coded: green – PD0...
<p>(A) Coproporphyrinogen III (B) isopraeroside IV (C) scopolin (D) nodakenin. Orange solid lines an...
<p>(A) Aurantiamide, (B) cnidiadin,(C) 2-hexadecenoic acid, and (D) Orlistat. Residues on which inte...
Alignments of high-scoring binding site pairs of the Barelier data set generated by (A) Cavbase, (B)...
<p>(A) Docking results overview, highlighting residues involved in binding interactions; Cut-through...
<p>(A) 2D molecular docking modeling of compound <b>C6</b> with 3PSD. (B) 3D model of the interactio...
<p><b>Copyright information:</b></p><p>Taken from "Setting up a large set of protein-ligand PDB comp...
<p>(A) Average pocket and ligand profiles of cluster a are represented on star plot. Dashed lines re...
Left column: visualization of the NS3-4A protease structure and surface of the binding pocket of wi...
<p>Ligplots of the compounds in binding pocket of PbICL. Pink circles indicate residues involved in ...
<p>(A) Interaction between PDE4 and compound 1 as predicted by molecular docking. (B) Interaction be...