Inter-strain expression changes (y-axis) for all genes (grey dots) and for genes containing a SNEP at nucleosome position +1. Upper panels: BY/RM comparison (using mRNA data from [33]). Lower panels: BY/YJM comparison (using mRNA data from [23]). Dots are colored according to the strain where the epigenetic mark is enriched (black: BY, red: RM, green: YJM). High values on the y-axis correspond to higher mRNA expression in the BY strain
Epidiv association with TATA within classes of genes of similar size. Same representation as Fig. 4D...
CUTs appear to lack a 3′ NFR. A) Metagene plot showing the average nucleosome occupancy of a 500 bp ...
Expression values for all the genes disomic strains relative to wild-type control from [25] compared...
Transcription rates (y-axis) reported in [43] for all genes (grey) and for genes belonging to cluste...
Density of SNEPs along an average gene. Curves are colored according to the strain where the mark is...
Normalized coverage profiles along an average gene. The ChIP coverage values of each histone mark sh...
Western blot control experiments. A) Antibody specificity. Whole cell extracts of wild-type BY strai...
Positioning divergence of nucleosomes that are well-positioned in BY (A) or in RM (B) but did not ma...
Inter-strain differential profiles of acetylation along an averaged gene (same binning as for Fig. 3...
ChIP coverage profiles of the indicated marks along an average gene for each sample (in per-million ...
Epigenomic BY-YJM divergence of three sets of genes. The gene clusters of Fig. 3B, which were define...
Table of clusters of genes sharing similar chromatin variation profiles in the RM/YJM comparison (A)...
Table of sequence polymorphisms and expression differences of 23 chromatin modifiers among the BY, R...
Similar co-variation of histone marks at isolated vs. regional SNEPs. H3K4me3 SNEPs were termed ‘iso...
Epidiv recalculated using fixed-size physical regions. For each gene, the region spanning 500 bp ups...
Epidiv association with TATA within classes of genes of similar size. Same representation as Fig. 4D...
CUTs appear to lack a 3′ NFR. A) Metagene plot showing the average nucleosome occupancy of a 500 bp ...
Expression values for all the genes disomic strains relative to wild-type control from [25] compared...
Transcription rates (y-axis) reported in [43] for all genes (grey) and for genes belonging to cluste...
Density of SNEPs along an average gene. Curves are colored according to the strain where the mark is...
Normalized coverage profiles along an average gene. The ChIP coverage values of each histone mark sh...
Western blot control experiments. A) Antibody specificity. Whole cell extracts of wild-type BY strai...
Positioning divergence of nucleosomes that are well-positioned in BY (A) or in RM (B) but did not ma...
Inter-strain differential profiles of acetylation along an averaged gene (same binning as for Fig. 3...
ChIP coverage profiles of the indicated marks along an average gene for each sample (in per-million ...
Epigenomic BY-YJM divergence of three sets of genes. The gene clusters of Fig. 3B, which were define...
Table of clusters of genes sharing similar chromatin variation profiles in the RM/YJM comparison (A)...
Table of sequence polymorphisms and expression differences of 23 chromatin modifiers among the BY, R...
Similar co-variation of histone marks at isolated vs. regional SNEPs. H3K4me3 SNEPs were termed ‘iso...
Epidiv recalculated using fixed-size physical regions. For each gene, the region spanning 500 bp ups...
Epidiv association with TATA within classes of genes of similar size. Same representation as Fig. 4D...
CUTs appear to lack a 3′ NFR. A) Metagene plot showing the average nucleosome occupancy of a 500 bp ...
Expression values for all the genes disomic strains relative to wild-type control from [25] compared...