Additional file 2: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Anosheh Afghahi (3577049)
Erna ForgĂł (3577067)
Aya Mitani (77277)
Manisha Desai (394665)
Sushama Varma (406989)
Tina Seto (3577046)
Joseph Rigdon (3577058)
Kristin Jensen (439751)
Megan Troxell (3577061)
Scarlett Gomez (3577055)
Amar Das (3577064)
Andrew Beck (389972)
Allison Kurian (3577052)
Robert West (306586)

Publication date

August 2015

DOI

10.6084/m9.figshare.c.3643352_d1.v1

Abstract

Treatments and outcomes of patients with ductal carcinoma in situ (DCIS), with and without invasive breast cancer. (DOC 32 kb

Extracted data

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Additional file 2: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Anosheh Afghahi (3577049)
Erna ForgĂł (3577067)
Aya Mitani (77277)
Manisha Desai (394665)
Sushama Varma (406989)
Tina Seto (3577046)
Joseph Rigdon (3577058)
Kristin Jensen (439751)
Megan Troxell (3577061)
Scarlett Gomez (3577055)
Amar Das (3577064)
Andrew Beck (389972)
Allison Kurian (3577052)
Robert West (306586)

Open link

Publication date

August 2015

DOI

10.6084/m9.figshare.c.3643352_d1.v1

Abstract

Treatments and outcomes of patients with ductal carcinoma in situ (DCIS), with and without invasive breast cancer. (DOC 32 kb

Extracted data

Jana Biermann (5618684)
Toshima Parris (3762496)
Szilรกrd Nemes (5618741)
Anna Danielsson (172641)
Hanna Engqvist (5618690)
Elisabeth Werner Rรถnnerman (5618744)
Eva Forssell-Aronsson (658141)
Anikรณ Kovรกcs (5618747)
Per Karlsson (48671)
Khalil Helou (561963)

August 2018

Supplementary Methods. Description of nucleic acid isolation and purification, aCGH gene expression ...

Additional file 2: of The long-term prognostic and predictive capacity of cyclin D1 gene amplification in 2305 breast tumours

Arian Lundberg (6413765)
Linda LindstrĂśm (6413777)
Jingmei Li (254314)
J. Harrell (6413768)
Eva Darai-Ramqvist (24171)
Emmanouil Sifakis (6413771)
Theodoros Foukakis (837602)
Charles Perou (3530138)
Kamila Czene (77258)
Jonas Bergh (23551)
Nicholas Tobin (4848271)

March 2019

Figure S2. Survival analysis (KaplanâMeier estimates) with breast cancer-specific survival (BCSS) ...

Additional file 3: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Anosheh Afghahi (3577049)
Erna ForgĂł (3577067)
Aya Mitani (77277)
Manisha Desai (394665)
Sushama Varma (406989)
Tina Seto (3577046)
Joseph Rigdon (3577058)
Kristin Jensen (439751)
Megan Troxell (3577061)
Scarlett Gomez (3577055)
Amar Das (3577064)
Andrew Beck (389972)
Allison Kurian (3577052)
Robert West (306586)

August 2015

Performance of cytogenetic combinations as predictors of invasive cancer. (DOC 55 kb

Supplementary Material for: Progression Potential of Ductal Carcinoma in situ Assessed by Genomic Copy Number Profiling

Kitamura M. (5865242)
Nakayama T. (4134652)
Mukaisho K. (5865245)
Mori T. (2879726)
Umeda T. (5865248)
Moritani S. (5865251)
Kushima R. (5865254)
Tani M. (5865257)
Sugihara H. (5865260)

October 2018

Background: Ductal carcinoma in situ (DCIS) of the breast is heterogeneous in terms of the risk of p...

Additional file 11: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50âyears

Christos Petridis (553688)
Iteeka Arora (6669857)
Vandna Shah (3661897)
Anargyros Megalios (6669863)
Charlotte Moss (6669866)
Anca Mera (4513309)
Angela Clifford (6669869)
Cheryl Gillett (553699)
Sarah Pinder (553692)
Ian Tomlinson (146463)
Rebecca Roylance (553687)
Michael Simpson (2990385)
Elinor Sawyer (146459)

May 2019

Age of onset of DCIS and family history details of women with two pathogenic variants in different g...

Additional file 1: Table S1. of Assessment of DNA methylation profiling and copy number variation as indications of clonal relationship in ipsilateral and contralateral breast cancers to distinguish recurrent breast cancer from a second primary tumour

Katie Huang (3420263)
Thomas Mikeska (274849)
Jason Li (23213)
Elena Takano (3420257)
Ewan Millar (3420266)
Peter Graham (831821)
Samantha Boyle (562679)
Ian Campbell (205212)
Terence Speed (3420260)
Alexander Dobrovic (8304)
Stephen Fox (152886)

October 2015

Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...

Additional file 12: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50âyears

Christos Petridis (553688)
Iteeka Arora (6669857)
Vandna Shah (3661897)
Anargyros Megalios (6669863)
Charlotte Moss (6669866)
Anca Mera (4513309)
Angela Clifford (6669869)
Cheryl Gillett (553699)
Sarah Pinder (553692)
Ian Tomlinson (146463)
Rebecca Roylance (553687)
Michael Simpson (2990385)
Elinor Sawyer (146459)

May 2019

Frequency of variants of unknown significance and DCIS in women <â50Â years of age by gene. (DOCX ...

Additional file 5: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S2. Copy number variation (CNV) analysis. CNV analysis of twelve chromosome regions previousl...

Additional file 2: Table S1. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

Logan Walker (3844042)
John Pearson (629146)
George Wiggins (3844039)
Graham Giles (521929)
John Hopper (218871)
Melissa Southey (81752)

March 2017

CNV data for cases and controls. Chromosome coordinates given according to Hg18. (XLSX 819 kb

Additional file 1: of Progression-specific genes identified in microdissected formalin-fixed and paraffin-embedded tissue containing matched ductal carcinoma in situ and invasive ductal breast cancers

Silke Schultz (5776364)
Harald Bartsch (5776367)
Karl Sotlar (23621)
Karina Petat-Dutter (5776376)
Michael Bonin (161261)
Steffen Kahlert (2721343)
Nadia Harbeck (5106476)
Ulrich Vogel (37785)
Harald Seeger (72128)
Tanja Fehm (23618)
Hans Neubauer (23624)

September 2018

WG-DASL analysis resulted in 1784 transcripts that were differentially expressed between DCIS and IB...

Additional file 10: Figure S4. of A systematic comparison of copy number alterations in four types of female cancer

Fatemeh Kaveh (3473135)
Lars Baumbusch (818210)
Daniel Nebdal (3473132)
Anne-Lise BĂ¸rresen-Dale (3473171)
Ole LingjĂŚrde (3473168)
Hege Edvardsen (115104)
Vessela Kristensen (25468)
Hiroko Solvang (3473138)

November 2016

Focal peaks of GISTIC for female cancers based on PCF-segmented input data (amplifications and delet...

Additional file 5: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan BiĂ¨che (5506235)
Florence Lerebours (303656)
CĂŠline Callens (5612045)

August 2018

Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...

Additional file 2: of The method of detection of ductal carcinoma in situ has no therapeutic implications: results of a population-based cohort study

Lotte Elshof (3822175)
Michael Schaapveld (3822178)
Emiel Rutgers (3822181)
Marjanka Schmidt (3437726)
Linda de Munck (3822184)
Flora van Leeuwen (3502727)
Jelle Wesseling (248405)

March 2017

Multivariable-adjusted Cox regression analysis of ipsilateral and contralateral invasive breast canc...

Additional file 1: of Clonal relatedness in tumour pairs of breast cancer patients

Jana Biermann (5618684)
Toshima Parris (3762496)
Szilรกrd Nemes (5618741)
Anna Danielsson (172641)
Hanna Engqvist (5618690)
Elisabeth Werner Rรถnnerman (5618744)
Eva Forssell-Aronsson (658141)
Anikรณ Kovรกcs (5618747)
Per Karlsson (48671)
Khalil Helou (561963)

August 2018

Supplementary Methods. Description of nucleic acid isolation and purification, aCGH gene expression ...

Additional file 2: of The long-term prognostic and predictive capacity of cyclin D1 gene amplification in 2305 breast tumours

Arian Lundberg (6413765)
Linda LindstrĂśm (6413777)
Jingmei Li (254314)
J. Harrell (6413768)
Eva Darai-Ramqvist (24171)
Emmanouil Sifakis (6413771)
Theodoros Foukakis (837602)
Charles Perou (3530138)
Kamila Czene (77258)
Jonas Bergh (23551)
Nicholas Tobin (4848271)

March 2019

Figure S2. Survival analysis (KaplanâMeier estimates) with breast cancer-specific survival (BCSS) ...

Additional file 3: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Anosheh Afghahi (3577049)
Erna ForgĂł (3577067)
Aya Mitani (77277)
Manisha Desai (394665)
Sushama Varma (406989)
Tina Seto (3577046)
Joseph Rigdon (3577058)
Kristin Jensen (439751)
Megan Troxell (3577061)
Scarlett Gomez (3577055)
Amar Das (3577064)
Andrew Beck (389972)
Allison Kurian (3577052)
Robert West (306586)

August 2015

Performance of cytogenetic combinations as predictors of invasive cancer. (DOC 55 kb

Supplementary Material for: Progression Potential of Ductal Carcinoma in situ Assessed by Genomic Copy Number Profiling

Kitamura M. (5865242)
Nakayama T. (4134652)
Mukaisho K. (5865245)
Mori T. (2879726)
Umeda T. (5865248)
Moritani S. (5865251)
Kushima R. (5865254)
Tani M. (5865257)
Sugihara H. (5865260)

October 2018

Background: Ductal carcinoma in situ (DCIS) of the breast is heterogeneous in terms of the risk of p...

Additional file 11: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50âyears

Christos Petridis (553688)
Iteeka Arora (6669857)
Vandna Shah (3661897)
Anargyros Megalios (6669863)
Charlotte Moss (6669866)
Anca Mera (4513309)
Angela Clifford (6669869)
Cheryl Gillett (553699)
Sarah Pinder (553692)
Ian Tomlinson (146463)
Rebecca Roylance (553687)
Michael Simpson (2990385)
Elinor Sawyer (146459)

May 2019

Age of onset of DCIS and family history details of women with two pathogenic variants in different g...

Katie Huang (3420263)
Thomas Mikeska (274849)
Jason Li (23213)
Elena Takano (3420257)
Ewan Millar (3420266)
Peter Graham (831821)
Samantha Boyle (562679)
Ian Campbell (205212)
Terence Speed (3420260)
Alexander Dobrovic (8304)
Stephen Fox (152886)

October 2015

Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...

Additional file 12: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50âyears

Christos Petridis (553688)
Iteeka Arora (6669857)
Vandna Shah (3661897)
Anargyros Megalios (6669863)
Charlotte Moss (6669866)
Anca Mera (4513309)
Angela Clifford (6669869)
Cheryl Gillett (553699)
Sarah Pinder (553692)
Ian Tomlinson (146463)
Rebecca Roylance (553687)
Michael Simpson (2990385)
Elinor Sawyer (146459)

May 2019

Frequency of variants of unknown significance and DCIS in women <â50Â years of age by gene. (DOCX ...

Additional file 5: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S2. Copy number variation (CNV) analysis. CNV analysis of twelve chromosome regions previousl...

Additional file 2: Table S1. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

Logan Walker (3844042)
John Pearson (629146)
George Wiggins (3844039)
Graham Giles (521929)
John Hopper (218871)
Melissa Southey (81752)

March 2017

CNV data for cases and controls. Chromosome coordinates given according to Hg18. (XLSX 819 kb

Silke Schultz (5776364)
Harald Bartsch (5776367)
Karl Sotlar (23621)
Karina Petat-Dutter (5776376)
Michael Bonin (161261)
Steffen Kahlert (2721343)
Nadia Harbeck (5106476)
Ulrich Vogel (37785)
Harald Seeger (72128)
Tanja Fehm (23618)
Hans Neubauer (23624)

September 2018

WG-DASL analysis resulted in 1784 transcripts that were differentially expressed between DCIS and IB...

Additional file 10: Figure S4. of A systematic comparison of copy number alterations in four types of female cancer

Fatemeh Kaveh (3473135)
Lars Baumbusch (818210)
Daniel Nebdal (3473132)
Anne-Lise BĂ¸rresen-Dale (3473171)
Ole LingjĂŚrde (3473168)
Hege Edvardsen (115104)
Vessela Kristensen (25468)
Hiroko Solvang (3473138)

November 2016

Focal peaks of GISTIC for female cancers based on PCF-segmented input data (amplifications and delet...

Additional file 5: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan BiĂ¨che (5506235)
Florence Lerebours (303656)
CĂŠline Callens (5612045)

August 2018

Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...

Additional file 2: of The method of detection of ductal carcinoma in situ has no therapeutic implications: results of a population-based cohort study

Lotte Elshof (3822175)
Michael Schaapveld (3822178)
Emiel Rutgers (3822181)
Marjanka Schmidt (3437726)
Linda de Munck (3822184)
Flora van Leeuwen (3502727)
Jelle Wesseling (248405)

March 2017

Multivariable-adjusted Cox regression analysis of ipsilateral and contralateral invasive breast canc...

Additional file 1: of Clonal relatedness in tumour pairs of breast cancer patients

Jana Biermann (5618684)
Toshima Parris (3762496)
Szilรกrd Nemes (5618741)
Anna Danielsson (172641)
Hanna Engqvist (5618690)
Elisabeth Werner Rรถnnerman (5618744)
Eva Forssell-Aronsson (658141)
Anikรณ Kovรกcs (5618747)
Per Karlsson (48671)
Khalil Helou (561963)

August 2018

Supplementary Methods. Description of nucleic acid isolation and purification, aCGH gene expression ...

Additional file 2: of The long-term prognostic and predictive capacity of cyclin D1 gene amplification in 2305 breast tumours

Arian Lundberg (6413765)
Linda LindstrĂśm (6413777)
Jingmei Li (254314)
J. Harrell (6413768)
Eva Darai-Ramqvist (24171)
Emmanouil Sifakis (6413771)
Theodoros Foukakis (837602)
Charles Perou (3530138)
Kamila Czene (77258)
Jonas Bergh (23551)
Nicholas Tobin (4848271)

March 2019

Figure S2. Survival analysis (KaplanâMeier estimates) with breast cancer-specific survival (BCSS) ...

Additional file 2: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Abstract

Extracted data

Additional file 2: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Abstract

Extracted data

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