Additional file 3: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Anosheh Afghahi (3577049)
Erna ForgĂł (3577067)
Aya Mitani (77277)
Manisha Desai (394665)
Sushama Varma (406989)
Tina Seto (3577046)
Joseph Rigdon (3577058)
Kristin Jensen (439751)
Megan Troxell (3577061)
Scarlett Gomez (3577055)
Amar Das (3577064)
Andrew Beck (389972)
Allison Kurian (3577052)
Robert West (306586)

Open link

Publication date

August 2015

DOI

10.6084/m9.figshare.c.3643352_d4.v1

Abstract

Performance of cytogenetic combinations as predictors of invasive cancer. (DOC 55 kb

Extracted data

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Additional file 3: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Anosheh Afghahi (3577049)
Erna ForgĂł (3577067)
Aya Mitani (77277)
Manisha Desai (394665)
Sushama Varma (406989)
Tina Seto (3577046)
Joseph Rigdon (3577058)
Kristin Jensen (439751)
Megan Troxell (3577061)
Scarlett Gomez (3577055)
Amar Das (3577064)
Andrew Beck (389972)
Allison Kurian (3577052)
Robert West (306586)

Open link

Publication date

August 2015

DOI

10.6084/m9.figshare.c.3643352_d4.v1

Abstract

Performance of cytogenetic combinations as predictors of invasive cancer. (DOC 55 kb

Extracted data

Fatemeh Kaveh (3473135)
Lars Baumbusch (818210)
Daniel Nebdal (3473132)
Anne-Lise Børresen-Dale (3413)
Ole Lingjærde (3469862)
Hege Edvardsen (115104)
Vessela Kristensen (25468)
Hiroko Solvang (3473138)

November 2016

GISTIC focal peaks for female cancers – gains and losses. Table S3A shows the number of focal peaks ...

Additional file 11: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50âyears

Christos Petridis (553688)
Iteeka Arora (6669857)
Vandna Shah (3661897)
Anargyros Megalios (6669863)
Charlotte Moss (6669866)
Anca Mera (4513309)
Angela Clifford (6669869)
Cheryl Gillett (553699)
Sarah Pinder (553692)
Ian Tomlinson (146463)
Rebecca Roylance (553687)
Michael Simpson (2990385)
Elinor Sawyer (146459)

May 2019

Age of onset of DCIS and family history details of women with two pathogenic variants in different g...

Additional file 2: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Anosheh Afghahi (3577049)
Erna ForgĂł (3577067)
Aya Mitani (77277)
Manisha Desai (394665)
Sushama Varma (406989)
Tina Seto (3577046)
Joseph Rigdon (3577058)
Kristin Jensen (439751)
Megan Troxell (3577061)
Scarlett Gomez (3577055)
Amar Das (3577064)
Andrew Beck (389972)
Allison Kurian (3577052)
Robert West (306586)

August 2015

Treatments and outcomes of patients with ductal carcinoma in situ (DCIS), with and without invasive ...

Additional file 1: of Genomic aberrations in young and elderlyÂ breast cancer patients

Hatem Azim (3485501)
Bastien Nguyen (3485498)
Sylvain BrohĂŠe (3485504)
Gabriele Zoppoli (201733)
Christos Sotiriou (643)

October 2015

The independent association between age at diagnosis and chromosomal copy number variation (CNV) eve...

Additional file 3: Table S2. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

Logan Walker (3844042)
John Pearson (629146)
George Wiggins (3844039)
Graham Giles (521929)
John Hopper (218871)
Melissa Southey (81752)

March 2017

Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...

Additional file 1: Table S1. of Assessment of DNA methylation profiling and copy number variation as indications of clonal relationship in ipsilateral and contralateral breast cancers to distinguish recurrent breast cancer from a second primary tumour

Katie Huang (3420263)
Thomas Mikeska (274849)
Jason Li (23213)
Elena Takano (3420257)
Ewan Millar (3420266)
Peter Graham (831821)
Samantha Boyle (562679)
Ian Campbell (205212)
Terence Speed (3420260)
Alexander Dobrovic (8304)
Stephen Fox (152886)

October 2015

Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...

Additional file 3: of Structural rearrangements generate cell-specific, gene-independent CRISPR-Cas9 loss of fitness effects

Emanuel Gonรงalves (5626652)
Fiona Behan (5626649)
Sandra Louzada (188636)
Damien Arnol (1403572)
Euan Stronach (5626676)
Fengtang Yang (45334)
Kosuke Yusa (3175638)
Oliver Stegle (170916)
Francesco Iorio (408438)
Mathew Garnett (408439)

February 2019

Table S2. Mean gene copy-number ratios of cancer associated genes across the cancer cell line panel....

Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Afghahi, Anosheh
Forgó, Erna
Mitani, Aya A.
Desai, Manisha
Varma, Sushama
Seto, Tina
Rigdon, Joseph
Jensen, Kristin C.
Troxell, Megan L.
Gomez, Scarlett Lin
Das, Amar K.
Beck, Andrew H.
Kurian, Allison W.
West, Robert B.

September 2015

Introduction: Screening mammography has contributed to a significant increase in the diagnosis of du...

Additional file 5: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S2. Copy number variation (CNV) analysis. CNV analysis of twelve chromosome regions previousl...

Supplementary Material for: Progression Potential of Ductal Carcinoma in situ Assessed by Genomic Copy Number Profiling

Kitamura M. (5865242)
Nakayama T. (4134652)
Mukaisho K. (5865245)
Mori T. (2879726)
Umeda T. (5865248)
Moritani S. (5865251)
Kushima R. (5865254)
Tani M. (5865257)
Sugihara H. (5865260)

October 2018

Background: Ductal carcinoma in situ (DCIS) of the breast is heterogeneous in terms of the risk of p...

Additional file 5: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan BiĂ¨che (5506235)
Florence Lerebours (303656)
CĂŠline Callens (5612045)

August 2018

Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...

Additional file 5: Table S4. of A systematic comparison of copy number alterations in four types of female cancer

Fatemeh Kaveh (3473135)
Lars Baumbusch (818210)
Daniel Nebdal (3473132)
Anne-Lise Børresen-Dale (3413)
Ole Lingjærde (3469862)
Hege Edvardsen (115104)
Vessela Kristensen (25468)
Hiroko Solvang (3473138)

November 2016

Highest percentage of overlap between α (CBS) and γ (PCF) – gains and losses. Table S4A demonstrates...

Additional file 1: Figure S1. of Hybrid clone cells derived from human breast epithelial cells and human breast cancer cells exhibit properties of cancer stem/initiating cells

Daria Gauck (4328029)
Silvia Keil (411001)
Bernd Niggemann (411002)
Kurt ZĂ¤nker (4328038)
Thomas Dittmar (411004)

August 2017

M13HS hybrid clone cells possess an increased mean chromosomal number. Shown are chromosome numbers ...

Additional file 4: Table S3. of A systematic comparison of copy number alterations in four types of female cancer

Fatemeh Kaveh (3473135)
Lars Baumbusch (818210)
Daniel Nebdal (3473132)
Anne-Lise Børresen-Dale (3413)
Ole Lingjærde (3469862)
Hege Edvardsen (115104)
Vessela Kristensen (25468)
Hiroko Solvang (3473138)

November 2016

GISTIC focal peaks for female cancers – gains and losses. Table S3A shows the number of focal peaks ...

Additional file 11: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50âyears

Christos Petridis (553688)
Iteeka Arora (6669857)
Vandna Shah (3661897)
Anargyros Megalios (6669863)
Charlotte Moss (6669866)
Anca Mera (4513309)
Angela Clifford (6669869)
Cheryl Gillett (553699)
Sarah Pinder (553692)
Ian Tomlinson (146463)
Rebecca Roylance (553687)
Michael Simpson (2990385)
Elinor Sawyer (146459)

May 2019

Age of onset of DCIS and family history details of women with two pathogenic variants in different g...

Additional file 2: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Anosheh Afghahi (3577049)
Erna ForgĂł (3577067)
Aya Mitani (77277)
Manisha Desai (394665)
Sushama Varma (406989)
Tina Seto (3577046)
Joseph Rigdon (3577058)
Kristin Jensen (439751)
Megan Troxell (3577061)
Scarlett Gomez (3577055)
Amar Das (3577064)
Andrew Beck (389972)
Allison Kurian (3577052)
Robert West (306586)

August 2015

Treatments and outcomes of patients with ductal carcinoma in situ (DCIS), with and without invasive ...

Additional file 3: Table S2. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

Logan Walker (3844042)
John Pearson (629146)
George Wiggins (3844039)
Graham Giles (521929)
John Hopper (218871)
Melissa Southey (81752)

March 2017

Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...

Katie Huang (3420263)
Thomas Mikeska (274849)
Jason Li (23213)
Elena Takano (3420257)
Ewan Millar (3420266)
Peter Graham (831821)
Samantha Boyle (562679)
Ian Campbell (205212)
Terence Speed (3420260)
Alexander Dobrovic (8304)
Stephen Fox (152886)

October 2015

Comparison of DNA methylation frequency of genes screened in breast carcinomas with the methylation ...

Additional file 3: of Structural rearrangements generate cell-specific, gene-independent CRISPR-Cas9 loss of fitness effects

Emanuel Gonรงalves (5626652)
Fiona Behan (5626649)
Sandra Louzada (188636)
Damien Arnol (1403572)
Euan Stronach (5626676)
Fengtang Yang (45334)
Kosuke Yusa (3175638)
Oliver Stegle (170916)
Francesco Iorio (408438)
Mathew Garnett (408439)

February 2019

Table S2. Mean gene copy-number ratios of cancer associated genes across the cancer cell line panel....

Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Afghahi, Anosheh
Forgó, Erna
Mitani, Aya A.
Desai, Manisha
Varma, Sushama
Seto, Tina
Rigdon, Joseph
Jensen, Kristin C.
Troxell, Megan L.
Gomez, Scarlett Lin
Das, Amar K.
Beck, Andrew H.
Kurian, Allison W.
West, Robert B.

September 2015

Introduction: Screening mammography has contributed to a significant increase in the diagnosis of du...

Additional file 5: of DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma

Emma Evelรถnn (6206783)
Mattias Landfors (195135)
Zahra Haider (4913311)
Linda Kรถhn (6206786)
Bรถrje Ljungberg (6206789)
Gรถran Roos (6206792)
Sofie Degerman (419239)

January 2019

Figure S2. Copy number variation (CNV) analysis. CNV analysis of twelve chromosome regions previousl...

Supplementary Material for: Progression Potential of Ductal Carcinoma in situ Assessed by Genomic Copy Number Profiling

Kitamura M. (5865242)
Nakayama T. (4134652)
Mukaisho K. (5865245)
Mori T. (2879726)
Umeda T. (5865248)
Moritani S. (5865251)
Kushima R. (5865254)
Tani M. (5865257)
Sugihara H. (5865260)

October 2018

Background: Ductal carcinoma in situ (DCIS) of the breast is heterogeneous in terms of the risk of p...

Additional file 5: of Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer

Xu Liang (433535)
Sophie Vacher (233965)
Anais Boulai (5612039)
Virginie Bernard (2226220)
Sylvain Baulande (5113562)
Mylene Bohec (5612042)
Ivan BiĂ¨che (5506235)
Florence Lerebours (303656)
CĂŠline Callens (5612045)

August 2018

Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...

Additional file 5: Table S4. of A systematic comparison of copy number alterations in four types of female cancer

Fatemeh Kaveh (3473135)
Lars Baumbusch (818210)
Daniel Nebdal (3473132)
Anne-Lise Børresen-Dale (3413)
Ole Lingjærde (3469862)
Hege Edvardsen (115104)
Vessela Kristensen (25468)
Hiroko Solvang (3473138)

November 2016

Highest percentage of overlap between α (CBS) and γ (PCF) – gains and losses. Table S4A demonstrates...

Additional file 1: Figure S1. of Hybrid clone cells derived from human breast epithelial cells and human breast cancer cells exhibit properties of cancer stem/initiating cells

Daria Gauck (4328029)
Silvia Keil (411001)
Bernd Niggemann (411002)
Kurt ZĂ¤nker (4328038)
Thomas Dittmar (411004)

August 2017

M13HS hybrid clone cells possess an increased mean chromosomal number. Shown are chromosome numbers ...

Additional file 4: Table S3. of A systematic comparison of copy number alterations in four types of female cancer

Fatemeh Kaveh (3473135)
Lars Baumbusch (818210)
Daniel Nebdal (3473132)
Anne-Lise Børresen-Dale (3413)
Ole Lingjærde (3469862)
Hege Edvardsen (115104)
Vessela Kristensen (25468)
Hiroko Solvang (3473138)

November 2016

GISTIC focal peaks for female cancers – gains and losses. Table S3A shows the number of focal peaks ...

Additional file 11: of Frequency of pathogenic germline variants in BRCA1, BRCA2, PALB2, CHEK2 and TP53 in ductal carcinoma in situ diagnosed in women under the age of 50âyears

Christos Petridis (553688)
Iteeka Arora (6669857)
Vandna Shah (3661897)
Anargyros Megalios (6669863)
Charlotte Moss (6669866)
Anca Mera (4513309)
Angela Clifford (6669869)
Cheryl Gillett (553699)
Sarah Pinder (553692)
Ian Tomlinson (146463)
Rebecca Roylance (553687)
Michael Simpson (2990385)
Elinor Sawyer (146459)

May 2019

Age of onset of DCIS and family history details of women with two pathogenic variants in different g...

Additional file 3: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Abstract

Extracted data

Additional file 3: of Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Abstract

Extracted data

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