<p>(A) NMDS plot based on unweighted (left) unifrac distance matrix of rarefied OTUs to 10,011 sequences. Samples treated with PMA prior to DNA extraction are indicated by a plus symbol. CCR: controlled cleanroom. UAF: uncontrolled adjoining facility. Variances are explained per each axis (NMDS1 and NMDS2, Stress = 0.06). (B) Distance based comparison heatmap combined with a hierarchical cluster analysis based on average neighbor (HCAN) of unweighted unifrac distances. Dissimilarity of samples is indicated by a color gradient from blue (similar) via white to red (dissimilar). Samples treated with PMA prior to DNA extraction are indicated by a plus symbol. CCR: controlled cleanroom. UAF: uncontrolled adjoining facility.</p
<p>The plot of the two NMDS axes was generated using a distance matrix calculated at the 3% level, w...
(A) Rarefaction curves using Faith’s Phylogenetic Diversity (PD Whole Tree) metric at 1000 sequences...
<p>The plot of the two NMDS axes was generated using a distance matrix calculated at the 3% level, w...
<p>(A) Rarefaction curves for OTUs at 97% similarity for environmental samples. (B) NMDA plot of the...
(A) Dispersal coefficients for sample clustering using 2, 3, 4, 5, 6 and 7 clusters. (B) Heatmap of ...
<p>HIV samples appear separated from control samples in beta diversity analyses. HIV samples are in ...
<p><i>a</i>. Principal component analyses (PCA) of the microbiota profiles of the nares and nasophar...
<p>based on taxa, which are part of the respective core microbiome from CCR (controlled cleanroom) a...
Pairwise comparisons of weighted UniFrac distance were performed between groups of samples subject t...
<p>NMDS plot based on a) weighted and b) unweighted UniFrac distance matrices showing clustering by ...
<p>(A)–(C) Rarefaction plots for PD Whole Tree measurements from the 454 analysis using trimmed, equ...
<p>Principal Coordinate Analysis plot of the tag-encoded 16S rRNA gene amplicon sequencing GM-charac...
<p>(a) Heatmap based on the hierarchical clustering solution (Bray–Curtis distance metric and comple...
<p>(A-C) Weighted and (D-F) unweighted UniFrac PCoA plots of individual sample in each group.</p
<p>Bray-Curtis distance similarity matrix was calculated from the square-root transformed abundance ...
<p>The plot of the two NMDS axes was generated using a distance matrix calculated at the 3% level, w...
(A) Rarefaction curves using Faith’s Phylogenetic Diversity (PD Whole Tree) metric at 1000 sequences...
<p>The plot of the two NMDS axes was generated using a distance matrix calculated at the 3% level, w...
<p>(A) Rarefaction curves for OTUs at 97% similarity for environmental samples. (B) NMDA plot of the...
(A) Dispersal coefficients for sample clustering using 2, 3, 4, 5, 6 and 7 clusters. (B) Heatmap of ...
<p>HIV samples appear separated from control samples in beta diversity analyses. HIV samples are in ...
<p><i>a</i>. Principal component analyses (PCA) of the microbiota profiles of the nares and nasophar...
<p>based on taxa, which are part of the respective core microbiome from CCR (controlled cleanroom) a...
Pairwise comparisons of weighted UniFrac distance were performed between groups of samples subject t...
<p>NMDS plot based on a) weighted and b) unweighted UniFrac distance matrices showing clustering by ...
<p>(A)–(C) Rarefaction plots for PD Whole Tree measurements from the 454 analysis using trimmed, equ...
<p>Principal Coordinate Analysis plot of the tag-encoded 16S rRNA gene amplicon sequencing GM-charac...
<p>(a) Heatmap based on the hierarchical clustering solution (Bray–Curtis distance metric and comple...
<p>(A-C) Weighted and (D-F) unweighted UniFrac PCoA plots of individual sample in each group.</p
<p>Bray-Curtis distance similarity matrix was calculated from the square-root transformed abundance ...
<p>The plot of the two NMDS axes was generated using a distance matrix calculated at the 3% level, w...
(A) Rarefaction curves using Faith’s Phylogenetic Diversity (PD Whole Tree) metric at 1000 sequences...
<p>The plot of the two NMDS axes was generated using a distance matrix calculated at the 3% level, w...