Additional file 1: Figure S1. of Predicting chromatin organization using histone marks

Prediction of Jin2013 hubs. (A) Distribution of chromatin anchors interactions frequency. Top 10 % are defined as hubs. (B) Percentage of super-enhancers covered by hubs. (C) Prediction accuracy using DNA sequence genetic features, including PhastCons conservation score, TSS proximity and GC content. AUC scores are shown in parentheses. (D) Prediction accuracy using individual histone marks. AUC scores are shown in parentheses. (E) Hubs prediction performance for hubs defined using different thresholds of interactions frequency. (F) Hubs prediction performance with various number of trees. Figure S2. Prediction of Rao2014 hubs. (A) Distribution of chromatin anchors interactions frequency. Top 10 % are defined as hubs. (B) Prediction accuracy using individual histone marks. AUC scores are shown in parentheses. Figure S3. TAD boundary prediction accuracy using individual histone marks. (PDF 1896 kb