Additional file 2: of Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

Additional file 2: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Figure S2. Collinearity between the bin map derived from the RIL population and the reference genome...

Additional file 2: of Fine mapping of qBK1, a major QTL for bakanae disease resistance in rice

Sais-Beul Lee (4753494)
Namgyu Kim (6700934)
Yeon-Jae Hur (4753497)
Su-Min Cho (6700943)
Tae-Heon Kim (2013925)
Ji-youn Lee (6700949)
Jun-Hyeon Cho (4753488)
Jong-Hee Lee (242907)
You-Chun Song (4753500)
Young-Su Seo (83496)
Jong-Min Ko (6700952)
Dong-Soo Park (1765399)

May 2019

Table S1. Twelve InDel markers designed by analyzing sequence differences between Nipponbare and 93â...

Additional file 2: Table S2. of Exploring the rice dispensable genome using a metagenome-like assembly strategy

Wen Yao (408229)
Guangwei Li (822910)
Hu Zhao (425380)
Gongwei Wang (1781380)
Xingming Lian (504682)
Weibo Xie (123006)

September 2015

Mapping rate of sequencing reads aligned to the Nipponbare genome of different accessions. (XLS 107Â...

Additional file 6: of Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

Marie-Alice Fraiture (3566537)
Philippe Herman (3566531)
Loic LefĂ¨vre (3566528)
Isabel Taverniers (3566534)
Marc De Loose (2026906)
Dieter Deforce (20882)
Nancy Roosens (250258)

August 2015

Visualisation of the obtained amplicons using the p35S and tNOS DNA walking methods applied on 100Â ...

Additional file 5: of Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

Marie-Alice Fraiture (3566537)
Philippe Herman (3566531)
Loic LefĂ¨vre (3566528)
Isabel Taverniers (3566534)
Marc De Loose (2026906)
Dieter Deforce (20882)
Nancy Roosens (250258)

August 2015

Sequences obtained from the GM maize MON863 event using the bidirectional p35S and tNOS DNA walking ...

Additional file 5: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

Sequences of the sequenced amplicons from the processed food matrix (GeM MP17) coming from a GeMMA S...

Additional file 4: of Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

Marie-Alice Fraiture (3566537)
Philippe Herman (3566531)
Loic Lefèvre (3566540)
Isabel Taverniers (3566534)
Marc De Loose (2026906)
Dieter Deforce (20882)
Nancy Roosens (250258)

August 2015

Results from qPCR SYBR®Green screening on maize samples using the p35S, tNOS and t35S pCAMBIA method...

Additional file 6: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

Sequences of oligonucleotides provided by the APAgeneTM GOLD Genome Walking Kit from BIO S&T. (DOCX ...

Additional file 1: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

The nucleotide variations, indicated by the red crosses, between the designed target-specific primer...

Additional file 4: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

Alignement of the targeted Cry1Ab sequences from the T304â40 event sequenced from the PCR verifica...

Additional file 1: of Dissection and fine-mapping of two QTL for grain size linked in a 460-kb region on chromosome 1 of rice

Qing Dong (5624)
Zhen-Hua Zhang (109852)
Lin-Lin Wang (243645)
Yu-Jun Zhu (109854)
Ye-Yang Fan (109856)
Tong-Min Mou (5590616)
Liang-Yong Ma (5350439)
Jie-Yun Zhuang (109859)

August 2018

Table S1. Primers used for population development and QTL mapping. Table S2. Primers used for sequen...

Additional file 1: Table S1. of A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data

Doori Park (3576821)
Su-Hyun Park (3980267)
Yong Ban (4358344)
Youn Kim (526650)
Kyoung-Cheul Park (4358341)
Nam-Soo Kim (4358338)
Ju-Kon Kim (105576)
Ik-Young Choi (34177)

August 2017

Primer pairs used in PCR. Figure S1. Circular map of T-DNA construct. Figure S2. PCR confirmation of...

Additional file 1: of Genetic analysis for the grain number heterosis of a super-hybrid rice WFYT025 combination using RNA-Seq

Liang Chen (73736)
Jianmin Bian (381692)
Shilai Shi (5396249)
Jianfeng Yu (534713)
Hira Khanzada (5396243)
Ghulam Wassan (5396246)
Changlan Zhu (841292)
Xin Luo (428648)
Shan Tong (5258921)
Xiaorong Yang (265168)
Xiaosong Peng (841293)
Shuang Yong (5396240)
Qiuying Yu (5396252)
Xiaopeng He (841294)
Junru Fu (841295)
Xiaorong Chen (459651)
Lifang Hu (841297)
Linjuan Ouyang (841296)
Haohua He (841299)

June 2018

Figure S1. Scatterplots comparing gene expression scores from biological replicates of WFYT025 and i...

Additional file 1: Figure S1. of Construction of a high-density mutant library in soybean and development of a mutant retrieval method using amplicon sequencing

Mai Tsuda (3408914)
Akito Kaga (146724)
Toyoaki Anai (3408911)
Takehiko Shimizu (146744)
Takashi Sayama (3408905)
Kyoko Takagi (3408899)
Kayo Machita (3408917)
Satoshi Watanabe (103008)
Minoru Nishimura (2732758)
Naohiro Yamada (509282)
Satomi Mori (561895)
Harumi Sasaki (561894)
Hiroyuki Kanamori (82111)
Yuichi Katayose (3408902)
Masao Ishimoto (3408908)

November 2015

Regions of Glyma20g25000 scanned by using HRM analysis and indexed amplicon sequencing. Yellow, codi...

Addiitional Files: The diagrams of population structure, highly divergent regions, GC content and Nanopore reads depth, SNP number and Nanopore reads depth, and analyses of co-linearity against Nipponbare reference genome in 251 accessions.

Shang Lianguang

November 2021

Additional Files for " A Super Pan-Genomic Landscape of Rice". Addtional File1: Supplementary File...

Additional file 2: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Figure S2. Collinearity between the bin map derived from the RIL population and the reference genome...

Additional file 2: of Fine mapping of qBK1, a major QTL for bakanae disease resistance in rice

Sais-Beul Lee (4753494)
Namgyu Kim (6700934)
Yeon-Jae Hur (4753497)
Su-Min Cho (6700943)
Tae-Heon Kim (2013925)
Ji-youn Lee (6700949)
Jun-Hyeon Cho (4753488)
Jong-Hee Lee (242907)
You-Chun Song (4753500)
Young-Su Seo (83496)
Jong-Min Ko (6700952)
Dong-Soo Park (1765399)

May 2019

Table S1. Twelve InDel markers designed by analyzing sequence differences between Nipponbare and 93â...

Additional file 2: Table S2. of Exploring the rice dispensable genome using a metagenome-like assembly strategy

Wen Yao (408229)
Guangwei Li (822910)
Hu Zhao (425380)
Gongwei Wang (1781380)
Xingming Lian (504682)
Weibo Xie (123006)

September 2015

Mapping rate of sequencing reads aligned to the Nipponbare genome of different accessions. (XLS 107Â...

Additional file 6: of Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

Marie-Alice Fraiture (3566537)
Philippe Herman (3566531)
Loic LefĂ¨vre (3566528)
Isabel Taverniers (3566534)
Marc De Loose (2026906)
Dieter Deforce (20882)
Nancy Roosens (250258)

August 2015

Visualisation of the obtained amplicons using the p35S and tNOS DNA walking methods applied on 100Â ...

Additional file 5: of Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

Marie-Alice Fraiture (3566537)
Philippe Herman (3566531)
Loic LefĂ¨vre (3566528)
Isabel Taverniers (3566534)
Marc De Loose (2026906)
Dieter Deforce (20882)
Nancy Roosens (250258)

August 2015

Sequences obtained from the GM maize MON863 event using the bidirectional p35S and tNOS DNA walking ...

Additional file 5: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

Sequences of the sequenced amplicons from the processed food matrix (GeM MP17) coming from a GeMMA S...

Additional file 4: of Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

Marie-Alice Fraiture (3566537)
Philippe Herman (3566531)
Loic Lefèvre (3566540)
Isabel Taverniers (3566534)
Marc De Loose (2026906)
Dieter Deforce (20882)
Nancy Roosens (250258)

August 2015

Results from qPCR SYBR®Green screening on maize samples using the p35S, tNOS and t35S pCAMBIA method...

Additional file 6: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

Sequences of oligonucleotides provided by the APAgeneTM GOLD Genome Walking Kit from BIO S&T. (DOCX ...

Additional file 1: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

The nucleotide variations, indicated by the red crosses, between the designed target-specific primer...

Additional file 4: of Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes

Marie-Alice Fraiture (3566537)
Julie Vandamme (5454806)
Philippe Herman (3566531)
Nancy Roosens (250258)

June 2018

Alignement of the targeted Cry1Ab sequences from the T304â40 event sequenced from the PCR verifica...

Additional file 1: of Dissection and fine-mapping of two QTL for grain size linked in a 460-kb region on chromosome 1 of rice

Qing Dong (5624)
Zhen-Hua Zhang (109852)
Lin-Lin Wang (243645)
Yu-Jun Zhu (109854)
Ye-Yang Fan (109856)
Tong-Min Mou (5590616)
Liang-Yong Ma (5350439)
Jie-Yun Zhuang (109859)

August 2018

Table S1. Primers used for population development and QTL mapping. Table S2. Primers used for sequen...

Additional file 1: Table S1. of A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data

Doori Park (3576821)
Su-Hyun Park (3980267)
Yong Ban (4358344)
Youn Kim (526650)
Kyoung-Cheul Park (4358341)
Nam-Soo Kim (4358338)
Ju-Kon Kim (105576)
Ik-Young Choi (34177)

August 2017

Primer pairs used in PCR. Figure S1. Circular map of T-DNA construct. Figure S2. PCR confirmation of...

Additional file 1: of Genetic analysis for the grain number heterosis of a super-hybrid rice WFYT025 combination using RNA-Seq

Liang Chen (73736)
Jianmin Bian (381692)
Shilai Shi (5396249)
Jianfeng Yu (534713)
Hira Khanzada (5396243)
Ghulam Wassan (5396246)
Changlan Zhu (841292)
Xin Luo (428648)
Shan Tong (5258921)
Xiaorong Yang (265168)
Xiaosong Peng (841293)
Shuang Yong (5396240)
Qiuying Yu (5396252)
Xiaopeng He (841294)
Junru Fu (841295)
Xiaorong Chen (459651)
Lifang Hu (841297)
Linjuan Ouyang (841296)
Haohua He (841299)

June 2018

Figure S1. Scatterplots comparing gene expression scores from biological replicates of WFYT025 and i...

Additional file 1: Figure S1. of Construction of a high-density mutant library in soybean and development of a mutant retrieval method using amplicon sequencing

Mai Tsuda (3408914)
Akito Kaga (146724)
Toyoaki Anai (3408911)
Takehiko Shimizu (146744)
Takashi Sayama (3408905)
Kyoko Takagi (3408899)
Kayo Machita (3408917)
Satoshi Watanabe (103008)
Minoru Nishimura (2732758)
Naohiro Yamada (509282)
Satomi Mori (561895)
Harumi Sasaki (561894)
Hiroyuki Kanamori (82111)
Yuichi Katayose (3408902)
Masao Ishimoto (3408908)

November 2015

Regions of Glyma20g25000 scanned by using HRM analysis and indexed amplicon sequencing. Yellow, codi...

Addiitional Files: The diagrams of population structure, highly divergent regions, GC content and Nanopore reads depth, SNP number and Nanopore reads depth, and analyses of co-linearity against Nipponbare reference genome in 251 accessions.

Shang Lianguang

November 2021

Additional Files for " A Super Pan-Genomic Landscape of Rice". Addtional File1: Supplementary File...

Additional file 2: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Figure S2. Collinearity between the bin map derived from the RIL population and the reference genome...

Additional file 2: of Fine mapping of qBK1, a major QTL for bakanae disease resistance in rice

Sais-Beul Lee (4753494)
Namgyu Kim (6700934)
Yeon-Jae Hur (4753497)
Su-Min Cho (6700943)
Tae-Heon Kim (2013925)
Ji-youn Lee (6700949)
Jun-Hyeon Cho (4753488)
Jong-Hee Lee (242907)
You-Chun Song (4753500)
Young-Su Seo (83496)
Jong-Min Ko (6700952)
Dong-Soo Park (1765399)

May 2019

Table S1. Twelve InDel markers designed by analyzing sequence differences between Nipponbare and 93â...

Additional file 2: Table S2. of Exploring the rice dispensable genome using a metagenome-like assembly strategy

Wen Yao (408229)
Guangwei Li (822910)
Hu Zhao (425380)
Gongwei Wang (1781380)
Xingming Lian (504682)
Weibo Xie (123006)

September 2015

Mapping rate of sequencing reads aligned to the Nipponbare genome of different accessions. (XLS 107Â...

Additional file 2: of Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

Abstract

Extracted data

Additional file 2: of Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

Abstract

Extracted data

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