File 4 Sequence characteristics

Bagley, Justin C.
Matamoros, Wilfredo
McMahan, Caleb D.
Tobler, Michael
Chakrabarty, Prosanta
Johnson, Jerald B.

August 2016

NEXUS file containing the 'full-cytb' dataset alignment, which includes 408 mtDNA sequences of the m...

McLean, Bryan
Helgen, Kristofer
Goodwin, H. Thomas
Cook, Joseph

January 2018

Spreadsheet list of mitochondrial DNA sequences used in phylogenetic inference, with publication nam...

Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved Polymerase Chain Reaction primers.

SIMON C.
FRATI, FRANCESCO
BECKENBACH A.
CRESPI B.
LIU H.
FLOOK P.

January 1994

DNA-sequence data from the mitochondrial genome are being used with increasing frequency to estimate...

File 4 Sequence characteristics

Koepfli, Klaus-Peter
Pollinger, John
Godinho, Raquel
Robinson, Jacqueline
Lea, Amanda
Hendricks, Sarah
Schweizer, Rena M.
Thalmann, Olaf
Silva, Pedro
Fan, Zhenxin
Yurchenko, Andrey A.
Dobrynin, Pavel
Makunin, Alexey
Cahill, James A.
Shapiro, Beth
Álvares, Francisco
Brito, José C.
Geffen, Eli
Leonard, Jennifer A.
Helgen, Kristofer M.
Johnson, Warren E.
O'Brien, Stephen J.
Van Valkenburgh, Blaire
Wayne, Robert K.

August 2015

Length (bp = base pairs), number of variable sites, number of parsimony-informative sites and mean e...

The microsatellite genotypes and mitochondrial DNA sequences

Jenni Leppänen (3297432)
Perttu Seppä (133620)
Kari Vepsäläinen (3297429)
Riitta Savolainen (3297435)

November 2016

The file contains tables of the microsatellite genotypes, mitochondrial DNA sequences and their refe...

The microsatellite genotypes and mitochondrial DNA sequences

Leppänen, Jenni
Seppä, Perttu
Vepsäläinen, Kari
Savolainen, Riitta

March 2015

The file contains tables of the microsatellite genotypes, mitochondrial DNA sequences and their refe...

Sequences Data from : "Large variation in the ratio of mitochondrial to nuclear mutation rate across animals : implications for genetic diversity and the use of mitochondrial DNA as a molecular marker"

Remi Allio (3614933)
Stefano Donega (3614936)
Nicolas Galtier (5823)
Benoit Nabholz (3614915)

July 2017

This is the datasets used in the manuscript entitled : "Large variation in the ratio of mitochondria...

File 1_Genbank accessions list for cytochrome b and mitochondrial genomes

Klaus-Peter Koepfli (41903)
John Pollinger (180514)
Raquel Godinho (372545)
Jacqueline Robinson (3274674)
Amanda Lea (3263592)
Sarah Hendricks (3197121)
Rena M. Schweizer (510043)
Olaf Thalmann (133779)
Pedro Silva (219069)
Zhenxin Fan (321079)
Andrey A. Yurchenko (3173334)
Pavel Dobrynin (2617393)
Alexey Makunin (3289524)
James A. Cahill (389730)
Beth Shapiro (30433)
Francisco Álvares (817585)
José C. Brito (229002)
Eli Geffen (212100)
Jennifer A. Leonard (92932)
Kristofer M. Helgen (279809)
Warren E. Johnson (108641)
Stephen J. O'Brien (53045)
Blaire Van Valkenburgh (246307)
Robert K. Wayne (145824)

November 2016

Genbank accessions, species and source localities of sequences from previously published studies tha...

File 1_Genbank accessions list for cytochrome b and mitochondrial genomes

Koepfli, Klaus-Peter
Pollinger, John
Godinho, Raquel
Robinson, Jacqueline
Lea, Amanda
Hendricks, Sarah
Schweizer, Rena M.
Thalmann, Olaf
Silva, Pedro
Fan, Zhenxin
Yurchenko, Andrey A.
Dobrynin, Pavel
Makunin, Alexey
Cahill, James A.
Shapiro, Beth
Álvares, Francisco
Brito, José C.
Geffen, Eli
Leonard, Jennifer A.
Helgen, Kristofer M.
Johnson, Warren E.
O'Brien, Stephen J.
Van Valkenburgh, Blaire
Wayne, Robert K.

August 2015

Genbank accessions, species and source localities of sequences from previously published studies tha...

DNA sequences for 2 mitochondrial and 8 nuclear genes

Pulgarín-R, Paulo C.
Smith, Brian Tilston
Bryson Jr., Robert W.
Spellman, Garth M.
Klicka, John

July 2013

This zip file contains 10 standard Nexus files with DNA sequences for 22 Pheucticus samples and a si...

Figure S4, Individual gene trees (a-d), BI consensus tree (e), and ML tree with two data partitions (f)

Patrick J. Krug (3324354)
Jann E. Vendetti (3362951)
Ryan A. Ellingson (3146595)
Cynthia D. Trowbridge (3362954)
Yayoi M. Hirano (3362957)
Danielle Y. Trathen (3362948)
Albert K. Rodriguez (3362960)
Cornelis Swennen (3362945)
Nerida G. Wilson (489968)
Ángel A. Valdés (3362963)

November 2016

Supplementary phylogenetic trees, including individual ML gene trees for each locus based on partial...

Figure S4, Individual gene trees (a-d), BI consensus tree (e), and ML tree with two data partitions (f)

Krug, Patrick J.
Vendetti, Jann E.
Ellingson, Ryan A.
Trowbridge, Cynthia D.
Hirano, Yayoi M.
Trathen, Danielle Y.
Rodriguez, Albert K.
Swennen, Cornelis
Wilson, Nerida G.
Valdés, Ángel A.

July 2015

Supplementary phylogenetic trees, including individual ML gene trees for each locus based on partial...

Figure S4, Individual gene trees (a-d), BI consensus tree (e), and ML tree with two data partitions (f)

Krug, Patrick J.
Vendetti, Jann E.
Ellingson, Ryan A.
Trowbridge, Cynthia D.
Hirano, Yayoi M.
Trathen, Danielle Y.
Rodriguez, Albert K.
Swennen, Cornelis
Wilson, Nerida G.
Valdés, Ángel A.

July 2015

Supplementary phylogenetic trees, including individual ML gene trees for each locus based on partial...

Nuclear and mtDNA loci

Scott Hotaling (2871410)
Mary Foley (3285033)
Nicolette Lawrence (3285030)
Jose Bocanegra (3285036)
Marina B. Blanco (651398)
Rodin Rasoloarison (3285027)
Peter M. Kappeler (104344)
Meredith A. Barrett (3285039)
Anne D. Yoder (216662)
David W. Weisrock (251090)

October 2016

Sequence data files in NEXUS format for all four nuclear and two mtDNA loci used in this study. Thes...

Molecular Diversity Summary Statistics.

Steven Micheletti (125440)
Eliseo Parra (125446)
Eric J. Routman (125449)

October 2012

Summary statistics for the two mitochondrial loci and their combined data as well as Mc1r ...

full-cytb dataset

Bagley, Justin C.
Matamoros, Wilfredo
McMahan, Caleb D.
Tobler, Michael
Chakrabarty, Prosanta
Johnson, Jerald B.

August 2016

NEXUS file containing the 'full-cytb' dataset alignment, which includes 408 mtDNA sequences of the m...

Supp_Data_1_mtDNA

McLean, Bryan
Helgen, Kristofer
Goodwin, H. Thomas
Cook, Joseph

January 2018

Spreadsheet list of mitochondrial DNA sequences used in phylogenetic inference, with publication nam...

Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved Polymerase Chain Reaction primers.

SIMON C.
FRATI, FRANCESCO
BECKENBACH A.
CRESPI B.
LIU H.
FLOOK P.

January 1994

DNA-sequence data from the mitochondrial genome are being used with increasing frequency to estimate...

File 4 Sequence characteristics

Koepfli, Klaus-Peter
Pollinger, John
Godinho, Raquel
Robinson, Jacqueline
Lea, Amanda
Hendricks, Sarah
Schweizer, Rena M.
Thalmann, Olaf
Silva, Pedro
Fan, Zhenxin
Yurchenko, Andrey A.
Dobrynin, Pavel
Makunin, Alexey
Cahill, James A.
Shapiro, Beth
Álvares, Francisco
Brito, José C.
Geffen, Eli
Leonard, Jennifer A.
Helgen, Kristofer M.
Johnson, Warren E.
O'Brien, Stephen J.
Van Valkenburgh, Blaire
Wayne, Robert K.

August 2015

Length (bp = base pairs), number of variable sites, number of parsimony-informative sites and mean e...

The microsatellite genotypes and mitochondrial DNA sequences

Jenni Leppänen (3297432)
Perttu Seppä (133620)
Kari Vepsäläinen (3297429)
Riitta Savolainen (3297435)

November 2016

The file contains tables of the microsatellite genotypes, mitochondrial DNA sequences and their refe...

The microsatellite genotypes and mitochondrial DNA sequences

Leppänen, Jenni
Seppä, Perttu
Vepsäläinen, Kari
Savolainen, Riitta

March 2015

The file contains tables of the microsatellite genotypes, mitochondrial DNA sequences and their refe...

Sequences Data from : "Large variation in the ratio of mitochondrial to nuclear mutation rate across animals : implications for genetic diversity and the use of mitochondrial DNA as a molecular marker"

Remi Allio (3614933)
Stefano Donega (3614936)
Nicolas Galtier (5823)
Benoit Nabholz (3614915)

July 2017

This is the datasets used in the manuscript entitled : "Large variation in the ratio of mitochondria...

File 1_Genbank accessions list for cytochrome b and mitochondrial genomes

Klaus-Peter Koepfli (41903)
John Pollinger (180514)
Raquel Godinho (372545)
Jacqueline Robinson (3274674)
Amanda Lea (3263592)
Sarah Hendricks (3197121)
Rena M. Schweizer (510043)
Olaf Thalmann (133779)
Pedro Silva (219069)
Zhenxin Fan (321079)
Andrey A. Yurchenko (3173334)
Pavel Dobrynin (2617393)
Alexey Makunin (3289524)
James A. Cahill (389730)
Beth Shapiro (30433)
Francisco Álvares (817585)
José C. Brito (229002)
Eli Geffen (212100)
Jennifer A. Leonard (92932)
Kristofer M. Helgen (279809)
Warren E. Johnson (108641)
Stephen J. O'Brien (53045)
Blaire Van Valkenburgh (246307)
Robert K. Wayne (145824)

November 2016

Genbank accessions, species and source localities of sequences from previously published studies tha...

File 1_Genbank accessions list for cytochrome b and mitochondrial genomes

Koepfli, Klaus-Peter
Pollinger, John
Godinho, Raquel
Robinson, Jacqueline
Lea, Amanda
Hendricks, Sarah
Schweizer, Rena M.
Thalmann, Olaf
Silva, Pedro
Fan, Zhenxin
Yurchenko, Andrey A.
Dobrynin, Pavel
Makunin, Alexey
Cahill, James A.
Shapiro, Beth
Álvares, Francisco
Brito, José C.
Geffen, Eli
Leonard, Jennifer A.
Helgen, Kristofer M.
Johnson, Warren E.
O'Brien, Stephen J.
Van Valkenburgh, Blaire
Wayne, Robert K.

August 2015

Genbank accessions, species and source localities of sequences from previously published studies tha...

DNA sequences for 2 mitochondrial and 8 nuclear genes

Pulgarín-R, Paulo C.
Smith, Brian Tilston
Bryson Jr., Robert W.
Spellman, Garth M.
Klicka, John

July 2013

This zip file contains 10 standard Nexus files with DNA sequences for 22 Pheucticus samples and a si...

Figure S4, Individual gene trees (a-d), BI consensus tree (e), and ML tree with two data partitions (f)

Patrick J. Krug (3324354)
Jann E. Vendetti (3362951)
Ryan A. Ellingson (3146595)
Cynthia D. Trowbridge (3362954)
Yayoi M. Hirano (3362957)
Danielle Y. Trathen (3362948)
Albert K. Rodriguez (3362960)
Cornelis Swennen (3362945)
Nerida G. Wilson (489968)
Ángel A. Valdés (3362963)

November 2016

Supplementary phylogenetic trees, including individual ML gene trees for each locus based on partial...

Figure S4, Individual gene trees (a-d), BI consensus tree (e), and ML tree with two data partitions (f)

Krug, Patrick J.
Vendetti, Jann E.
Ellingson, Ryan A.
Trowbridge, Cynthia D.
Hirano, Yayoi M.
Trathen, Danielle Y.
Rodriguez, Albert K.
Swennen, Cornelis
Wilson, Nerida G.
Valdés, Ángel A.

July 2015

Supplementary phylogenetic trees, including individual ML gene trees for each locus based on partial...

Figure S4, Individual gene trees (a-d), BI consensus tree (e), and ML tree with two data partitions (f)

Krug, Patrick J.
Vendetti, Jann E.
Ellingson, Ryan A.
Trowbridge, Cynthia D.
Hirano, Yayoi M.
Trathen, Danielle Y.
Rodriguez, Albert K.
Swennen, Cornelis
Wilson, Nerida G.
Valdés, Ángel A.

July 2015

Supplementary phylogenetic trees, including individual ML gene trees for each locus based on partial...

Nuclear and mtDNA loci

Scott Hotaling (2871410)
Mary Foley (3285033)
Nicolette Lawrence (3285030)
Jose Bocanegra (3285036)
Marina B. Blanco (651398)
Rodin Rasoloarison (3285027)
Peter M. Kappeler (104344)
Meredith A. Barrett (3285039)
Anne D. Yoder (216662)
David W. Weisrock (251090)

October 2016

Sequence data files in NEXUS format for all four nuclear and two mtDNA loci used in this study. Thes...

Molecular Diversity Summary Statistics.

Steven Micheletti (125440)
Eliseo Parra (125446)
Eric J. Routman (125449)

October 2012

Summary statistics for the two mitochondrial loci and their combined data as well as Mc1r ...

full-cytb dataset

Bagley, Justin C.
Matamoros, Wilfredo
McMahan, Caleb D.
Tobler, Michael
Chakrabarty, Prosanta
Johnson, Jerald B.

August 2016

NEXUS file containing the 'full-cytb' dataset alignment, which includes 408 mtDNA sequences of the m...

Supp_Data_1_mtDNA

McLean, Bryan
Helgen, Kristofer
Goodwin, H. Thomas
Cook, Joseph

January 2018

Spreadsheet list of mitochondrial DNA sequences used in phylogenetic inference, with publication nam...

Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved Polymerase Chain Reaction primers.

SIMON C.
FRATI, FRANCESCO
BECKENBACH A.
CRESPI B.
LIU H.
FLOOK P.

January 1994

DNA-sequence data from the mitochondrial genome are being used with increasing frequency to estimate...

File 4 Sequence characteristics

Abstract

Extracted data

File 4 Sequence characteristics

Abstract

Extracted data

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