Figure S7. Heatmaps for λ conversion between different PWMs. These are additional examples of heatmaps of sequence-specific residence time that are used for λ conversion between different PWMs of the same TF. Alternative versions of PWMs are from BioConductor R package of PWMEnrich.Dmelanogaster.background [17]. Each column of the heatmaps represents a specific λ value and each row represents a specific binding site strength level. (PDF 25.5KB
Transcription factor-DNA interactions, central to cellular regulation and control, are commonly desc...
Background: Positional weight matrix (PWM) is a de facto standard model to describe transcription f...
Figure S9. Heatmap of Spearmanâs correlation coefficients for pairwise comparisons of the sets of ...
Figure S6. Comparison of unique k-mer number passing 0.1 % top PWM score threshold in genomic backgr...
Figure S4. Comparison of Îť values calculated by using different pseudo-count values in PWMs. Subfig...
Figure S1. The relationship between maximum PWM score and information content of PWMs. Individual do...
Figure S3. Estimated Îť distribution in relation to PWM motif length. Each color coded point represe...
Figure S5. Correlation of λ rank obtained by using different top score thresholds in Eq. 6. We compa...
Abstract Background Scoring DNA sequences against Pos...
International audienceBackground: Positional weight matrix (PWM) is a de facto standard model to des...
<p>The number of matrices that are initially associated with each organism is compared to the number...
Figure S2. Estimated λdistribution across major TF families. BBA-ZF represents the λdistribution for...
Selected and significant transcription factor gene interactions data inferred by the linear model an...
Position weight matrices (PWMs) have become a tool of choice for the identification of transcription...
Transcription factor-DNA interactions, central to cellular regulation and control, are commonly desc...
Transcription factor-DNA interactions, central to cellular regulation and control, are commonly desc...
Background: Positional weight matrix (PWM) is a de facto standard model to describe transcription f...
Figure S9. Heatmap of Spearmanâs correlation coefficients for pairwise comparisons of the sets of ...
Figure S6. Comparison of unique k-mer number passing 0.1 % top PWM score threshold in genomic backgr...
Figure S4. Comparison of Îť values calculated by using different pseudo-count values in PWMs. Subfig...
Figure S1. The relationship between maximum PWM score and information content of PWMs. Individual do...
Figure S3. Estimated Îť distribution in relation to PWM motif length. Each color coded point represe...
Figure S5. Correlation of λ rank obtained by using different top score thresholds in Eq. 6. We compa...
Abstract Background Scoring DNA sequences against Pos...
International audienceBackground: Positional weight matrix (PWM) is a de facto standard model to des...
<p>The number of matrices that are initially associated with each organism is compared to the number...
Figure S2. Estimated λdistribution across major TF families. BBA-ZF represents the λdistribution for...
Selected and significant transcription factor gene interactions data inferred by the linear model an...
Position weight matrices (PWMs) have become a tool of choice for the identification of transcription...
Transcription factor-DNA interactions, central to cellular regulation and control, are commonly desc...
Transcription factor-DNA interactions, central to cellular regulation and control, are commonly desc...
Background: Positional weight matrix (PWM) is a de facto standard model to describe transcription f...
Figure S9. Heatmap of Spearmanâs correlation coefficients for pairwise comparisons of the sets of ...