Additional file 1: Table S1. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Additional file 2: Table S1. of Transcriptome assembly in Suaeda aralocaspica to reveal the distinct temporal gene/miRNA alterations between the dimorphic seeds during germination

Lei Wang (6656)
Hong-Ling Wang (2349883)
Lan Yin (131556)
Chang-Yan Tian (4525900)

October 2017

Statistics of RNA sequencing reads. Table S2. Summary of de novo sequence assembly using Trinity. Ta...

Additional file 3: of De novo transcriptome assembly analysis of weed Apera spica-venti from seven tissues and growth stages

Marielle Babineau (3722119)
Khalid Mahmood (259708)
Solvejg Mathiassen (3722122)
Per Kudsk (401776)
Michael Kristensen (516053)

February 2017

Plant Gene Ontology terms associated with the combined assembly of all tissues and growth stage of A...

Additional file 6: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Ăsa Grimberg (3549173)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Log 2 ratios and RPKM values of differentially expressed genes. Table of genes shown to be different...

Additional file 2: Table S2. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

Molecular function category annotation by Gene Ontology for differentially expressed transcripts (DE...

Additional file 3: Table S3. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

Cellular component category annotation by Gene Ontology for differentially expressed transcripts (DE...

Additional file 4: Table S4. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

Kegg-based metabolic pathway annotation for differentially expressed transcripts (DET) for pair-wise...

Additional file 10: Table S9. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

BlastX results with the list of genes associated with biosynthesis of the two major hormone classes ...

Additional file 7: Table S6. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

List of genes associated with RNAi mechanism identified in the T. absoluta assembled transcriptome a...

Additional file 9: Table S8. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

List of genes associated with biosynthesis of the two major hormone classes sesquiterpenoid juvenile...

(Tuta absoluta)

Roberto De A. Camargo
Roberto H. Herai
Luana N. Santos
Flavia M M Bento
Joni E. Lima
Henrique Marques-souza
Antonio Figueira

August 2016

De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated con...

Additional file 2: of Transcriptomic resources for the medicinal legume Mucuna pruriens: de novo transcriptome assembly, annotation, identification and validation of EST-SSR markers

N. Sathyanarayana (4049326)
Ranjith Pittala (4049323)
Pankaj Tripathi (4049320)
Ratan Chopra (658418)
Heikham Singh (3470033)
Vikas Belamkar (3221814)
Pardeep Bhardwaj (4049317)
Jeff Doyle (3446183)
Ashley Egan (4049314)

May 2017

Number of transcripts assigned to Biological, Cellular and Metabolic processes from GO analysis of t...

Additional file 2: of Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

Per Wilhelmsson (6279842)
Jake Chandler (6279845)
Noe Fernandez-Pozo (4384123)
Kai Graeber (477740)
Kristian Ullrich (3548282)
Waheed Arshad (562036)
Safina Khan (6279848)
Johannes Hofberger (6279851)
Karl Buchta (6279854)
Patrick Edger (3255321)
J. Pires (2180410)
M. Schranz (5795027)
Gerhard Leubner-Metzger (477741)
Stefan Rensing (6279857)

January 2019

Gene coverage calculation (Table S1), reciprocal best BLAST paring (Table S2), full annotation and R...

Additional file 2: of Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo v gene in tobacco

Changxian Yang (406274)
Yanna Gao (3501176)
Shenghua Gao (3501179)
Gang Yu (202259)
Cheng Xiong (3501182)
Jiang Chang (119863)
Hanxia Li (115299)
Zhibiao Ye (115309)

October 2015

The primers used for the confirmation of RNA-seq data and positive detection of transgenic tobacco p...

Additional file 6: of Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo v gene in tobacco

Changxian Yang (406274)
Yanna Gao (3501176)
Shenghua Gao (3501179)
Gang Yu (202259)
Cheng Xiong (3501182)
Jiang Chang (119863)
Hanxia Li (115299)
Zhibiao Ye (115309)

October 2015

Analysis of the gene expression correlation between the two indicated pairs of samples (T1 versus WT...

Additional file 1: of Comparative transcriptomics between high and low rubber producing Taraxacum kok-saghyz R. plants

Francesco Panara (6050525)
Loredana Lopez (200637)
Loretta Daddiego (187702)
Elio Fantini (787860)
Paolo Facella (187698)
Gaetano Perrotta (102176)

December 2018

Table S1. Analysis of rubber content. Table S2. Summary of sequencing results from HR, LR and Y11 li...

Additional file 2: Table S1. of Transcriptome assembly in Suaeda aralocaspica to reveal the distinct temporal gene/miRNA alterations between the dimorphic seeds during germination

Lei Wang (6656)
Hong-Ling Wang (2349883)
Lan Yin (131556)
Chang-Yan Tian (4525900)

October 2017

Statistics of RNA sequencing reads. Table S2. Summary of de novo sequence assembly using Trinity. Ta...

Additional file 3: of De novo transcriptome assembly analysis of weed Apera spica-venti from seven tissues and growth stages

Marielle Babineau (3722119)
Khalid Mahmood (259708)
Solvejg Mathiassen (3722122)
Per Kudsk (401776)
Michael Kristensen (516053)

February 2017

Plant Gene Ontology terms associated with the combined assembly of all tissues and growth stage of A...

Additional file 6: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Ăsa Grimberg (3549173)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Log 2 ratios and RPKM values of differentially expressed genes. Table of genes shown to be different...

Additional file 2: Table S2. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

Molecular function category annotation by Gene Ontology for differentially expressed transcripts (DE...

Additional file 3: Table S3. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

Cellular component category annotation by Gene Ontology for differentially expressed transcripts (DE...

Additional file 4: Table S4. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

Kegg-based metabolic pathway annotation for differentially expressed transcripts (DET) for pair-wise...

Additional file 10: Table S9. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

BlastX results with the list of genes associated with biosynthesis of the two major hormone classes ...

Additional file 7: Table S6. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

List of genes associated with RNAi mechanism identified in the T. absoluta assembled transcriptome a...

Additional file 9: Table S8. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Roberto Camargo (3410669)
Roberto Herai (3410666)
Luana Santos (778613)
Flavia Bento (3410663)
Joni Lima (3410657)
Henrique Marques-Souza (3410654)
Antonio Figueira (3410660)

August 2015

List of genes associated with biosynthesis of the two major hormone classes sesquiterpenoid juvenile...

(Tuta absoluta)

Roberto De A. Camargo
Roberto H. Herai
Luana N. Santos
Flavia M M Bento
Joni E. Lima
Henrique Marques-souza
Antonio Figueira

August 2016

De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated con...

Additional file 2: of Transcriptomic resources for the medicinal legume Mucuna pruriens: de novo transcriptome assembly, annotation, identification and validation of EST-SSR markers

N. Sathyanarayana (4049326)
Ranjith Pittala (4049323)
Pankaj Tripathi (4049320)
Ratan Chopra (658418)
Heikham Singh (3470033)
Vikas Belamkar (3221814)
Pardeep Bhardwaj (4049317)
Jeff Doyle (3446183)
Ashley Egan (4049314)

May 2017

Number of transcripts assigned to Biological, Cellular and Metabolic processes from GO analysis of t...

Additional file 2: of Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds

Per Wilhelmsson (6279842)
Jake Chandler (6279845)
Noe Fernandez-Pozo (4384123)
Kai Graeber (477740)
Kristian Ullrich (3548282)
Waheed Arshad (562036)
Safina Khan (6279848)
Johannes Hofberger (6279851)
Karl Buchta (6279854)
Patrick Edger (3255321)
J. Pires (2180410)
M. Schranz (5795027)
Gerhard Leubner-Metzger (477741)
Stefan Rensing (6279857)

January 2019

Gene coverage calculation (Table S1), reciprocal best BLAST paring (Table S2), full annotation and R...

Additional file 2: of Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo v gene in tobacco

Changxian Yang (406274)
Yanna Gao (3501176)
Shenghua Gao (3501179)
Gang Yu (202259)
Cheng Xiong (3501182)
Jiang Chang (119863)
Hanxia Li (115299)
Zhibiao Ye (115309)

October 2015

The primers used for the confirmation of RNA-seq data and positive detection of transgenic tobacco p...

Additional file 6: of Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo v gene in tobacco

Changxian Yang (406274)
Yanna Gao (3501176)
Shenghua Gao (3501179)
Gang Yu (202259)
Cheng Xiong (3501182)
Jiang Chang (119863)
Hanxia Li (115299)
Zhibiao Ye (115309)

October 2015

Analysis of the gene expression correlation between the two indicated pairs of samples (T1 versus WT...

Additional file 1: of Comparative transcriptomics between high and low rubber producing Taraxacum kok-saghyz R. plants

Francesco Panara (6050525)
Loredana Lopez (200637)
Loretta Daddiego (187702)
Elio Fantini (787860)
Paolo Facella (187698)
Gaetano Perrotta (102176)

December 2018

Table S1. Analysis of rubber content. Table S2. Summary of sequencing results from HR, LR and Y11 li...

Additional file 2: Table S1. of Transcriptome assembly in Suaeda aralocaspica to reveal the distinct temporal gene/miRNA alterations between the dimorphic seeds during germination

Lei Wang (6656)
Hong-Ling Wang (2349883)
Lan Yin (131556)
Chang-Yan Tian (4525900)

October 2017

Statistics of RNA sequencing reads. Table S2. Summary of de novo sequence assembly using Trinity. Ta...

Additional file 3: of De novo transcriptome assembly analysis of weed Apera spica-venti from seven tissues and growth stages

Marielle Babineau (3722119)
Khalid Mahmood (259708)
Solvejg Mathiassen (3722122)
Per Kudsk (401776)
Michael Kristensen (516053)

February 2017

Plant Gene Ontology terms associated with the combined assembly of all tissues and growth stage of A...

Additional file 6: of Transcriptional transitions in Nicotiana benthamiana leaves upon induction of oil synthesis by WRINKLED1 homologs from diverse species and tissues

Ăsa Grimberg (3549173)
Anders Carlsson (607606)
Salla Marttila (2202103)
Rishikesh Bhalerao (3294)
Per Hofvander (3549170)

August 2015

Log 2 ratios and RPKM values of differentially expressed genes. Table of genes shown to be different...

Additional file 1: Table S1. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Abstract

Extracted data

Additional file 1: Table S1. of De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)

Abstract

Extracted data

Related items

Related items