Additional file 4: Figure S2. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Additional file 6: of Patterns of microsatellite distribution across eukaryotic genomes

Surabhi Srivastava (4435186)
Akshay Avvaru (6393773)
Divya Sowpati (4435189)
Rakesh Mishra (386293)

February 2019

Heatmap.json. Organisms and their SSR information, to be viewed as a heatmap in Morpheus ( https://s...

Additional file 5: of Fine-mapping host genetic variation underlying outcomes to Mycobacterium bovis infection in dairy cows

S. Wilkinson (4171426)
S.C. Bishop (4171435)
A.R. Allen (4171417)
S.H. McBride (4171432)
R.A. Skuce (4171423)
M. Bermingham (4171429)
J.A. Woolliams (4171414)
E.J. Glass (4171420)

June 2017

Genome-wide association analysis for NVLs vs VLs a Manhattan plot displaying the –log10(P- value) of...

Additional file 7: of In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans

Lars Langhanki (3369824)
Petya Berger (5881013)
Janina Treffon (3369830)
Francesco Catania (375780)
Barbara Kahl (374193)
Alexander Mellmann (72273)

October 2018

SNPs and Indels between the consecutive t012 and t021Â S. aureus isolates within the timespan betwee...

Additional file 2: Figure S1. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Izza Nasrullah (144044)
Azeem Butt (3566723)
Shifa Tahir (144050)
Muhammad Idrees (92773)
Yigang Tong (36054)

August 2015

Comparative analysis of relative synonymous codon usage (RSCU) patterns between MARV, H. sapiens, an...

Data from: Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Nasrullah, Izza
Butt, Azeem M
Tahir, Shifa
Idrees, Muhammad
Tong, Yigang

September 2015

Background. The Marburg virus (MARV) has a negative-sense single-stranded RNA genome, belongs to the...

Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Nasrullah, Izza
Butt, Azeem M.
Tahir, Shifa
Idrees, Muhammad
Tong, Yigang

January 2015

The Marburg virus (MARV) has a negative-sense single-stranded RNA genome, belongs to the family Filo...

Additional file 4: Figure S2. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Bidhan Ch. Bera (4383163)
Nitin Virmani (749243)
Naveen Kumar (66313)
Taruna Anand (828898)
S Pavulraj (4383166)
Adam Rash (3493286)
Debra Elton (29877)
Nicola Rash (4383160)
Sandeep Bhatia (2633815)
Richa Sood (2633812)
Raj Singh (103123)
Bhupendra Tripathi (4383157)

August 2017

Comparison of Relative Synonymous Codon Usage (RSCU) patterns of EIVs polymerase genes with their ho...

Additional file 4: of Structural variation of centromeric endogenous retroviruses in human populations and their impact on cutaneous T-cell lymphoma, SĂŠzary syndrome, and HIV infection

Mark Kaplan (6660752)
Mark Kaminski (6660755)
Judith Estes (6660758)
Scott Gitlin (6660761)
Joseph Zahn (6660764)
James Elder (3555407)
Trilokraj Tejasvi (6578087)
Elizabeth Gensterblum (3500609)
Amr Sawalha (3500606)
Joseph McGowan (6660767)
Michael Dosik (6660770)
Haner Direskeneli (614503)
Guher Direskeneli (6660773)
Sally Adebamowo (6660776)
Clement Adebamowo (245336)
Mohammad Sajadi (22826)
Rafael Contreras-Galindo (6411797)

May 2019

Figure S2. Highlight plot of HERV-K HML-2 3p25.3 sequences. The highlight plot displays the differen...

Additional file 1: of Close evolutionary relationship between rice black-streaked dwarf virus and southern rice black-streaked dwarf virus based on analysis of their bicistronic RNAs

Zenghui Wang (567688)
Chengming Yu (3503594)
Yuanhao Peng (6643082)
Chengshi Ding (806735)
Qingliang Li (36731)
Deya Wang (3503591)
Xuefeng Yuan (714724)

April 2019

Table S1. Relative synonymous codon usage (RSCU) values for each codon in S5, S7 and S9 of RBSDV and...

Selective Factors Associated with the Evolution of Codon Usage in Natural Populations of Arboviruses.

Lauro Velazquez-Salinas
Selene Zarate
Michael Eschbaumer
Francisco Pereira Lobo
Douglas P Gladue
Jonathan Arzt
Isabel S Novella
Luis L Rodriguez

Arboviruses (arthropod borne viruses) have life cycles that include both vertebrate and invertebrate...

Image_1_A comprehensive analysis of Usutu virus (USUV) genomes revealed lineage-specific codon usage patterns and host adaptations.JPEG

Jianglin Zhou (8534235)
Yaling Xing (185753)
Zhe Zhou (156517)
Shengqi Wang (13970)

January 2023

The Usutu virus (USUV) is an emerging arbovirus virus maintained in the environment of Afro-Eurasia ...

Table_1_A comprehensive analysis of Usutu virus (USUV) genomes revealed lineage-specific codon usage patterns and host adaptations.XLSX

Jianglin Zhou (8534235)
Yaling Xing (185753)
Zhe Zhou (156517)
Shengqi Wang (13970)

January 2023

The Usutu virus (USUV) is an emerging arbovirus virus maintained in the environment of Afro-Eurasia ...

Analysis of Synonymous Codon Usage Bias of Zika Virus and Its Adaption to the Hosts.

Hongju Wang
Siqing Liu
Bo Zhang
Wenqiang Wei

January 2016

Zika virus (ZIKV) is a mosquito-borne virus (arbovirus) in the family Flaviviridae, and the symptoms...

Image_6_A comprehensive analysis of Usutu virus (USUV) genomes revealed lineage-specific codon usage patterns and host adaptations.JPEG

Jianglin Zhou (8534235)
Yaling Xing (185753)
Zhe Zhou (156517)
Shengqi Wang (13970)

January 2023

The Usutu virus (USUV) is an emerging arbovirus virus maintained in the environment of Afro-Eurasia ...

Image_3_A comprehensive analysis of Usutu virus (USUV) genomes revealed lineage-specific codon usage patterns and host adaptations.JPEG

Jianglin Zhou (8534235)
Yaling Xing (185753)
Zhe Zhou (156517)
Shengqi Wang (13970)

January 2023

The Usutu virus (USUV) is an emerging arbovirus virus maintained in the environment of Afro-Eurasia ...

Additional file 6: of Patterns of microsatellite distribution across eukaryotic genomes

Surabhi Srivastava (4435186)
Akshay Avvaru (6393773)
Divya Sowpati (4435189)
Rakesh Mishra (386293)

February 2019

Heatmap.json. Organisms and their SSR information, to be viewed as a heatmap in Morpheus ( https://s...

Additional file 5: of Fine-mapping host genetic variation underlying outcomes to Mycobacterium bovis infection in dairy cows

S. Wilkinson (4171426)
S.C. Bishop (4171435)
A.R. Allen (4171417)
S.H. McBride (4171432)
R.A. Skuce (4171423)
M. Bermingham (4171429)
J.A. Woolliams (4171414)
E.J. Glass (4171420)

June 2017

Genome-wide association analysis for NVLs vs VLs a Manhattan plot displaying the –log10(P- value) of...

Additional file 7: of In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans

Lars Langhanki (3369824)
Petya Berger (5881013)
Janina Treffon (3369830)
Francesco Catania (375780)
Barbara Kahl (374193)
Alexander Mellmann (72273)

October 2018

SNPs and Indels between the consecutive t012 and t021Â S. aureus isolates within the timespan betwee...

Additional file 2: Figure S1. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Izza Nasrullah (144044)
Azeem Butt (3566723)
Shifa Tahir (144050)
Muhammad Idrees (92773)
Yigang Tong (36054)

August 2015

Comparative analysis of relative synonymous codon usage (RSCU) patterns between MARV, H. sapiens, an...

Data from: Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Nasrullah, Izza
Butt, Azeem M
Tahir, Shifa
Idrees, Muhammad
Tong, Yigang

September 2015

Background. The Marburg virus (MARV) has a negative-sense single-stranded RNA genome, belongs to the...

Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Nasrullah, Izza
Butt, Azeem M.
Tahir, Shifa
Idrees, Muhammad
Tong, Yigang

January 2015

The Marburg virus (MARV) has a negative-sense single-stranded RNA genome, belongs to the family Filo...

Additional file 4: Figure S2. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Bidhan Ch. Bera (4383163)
Nitin Virmani (749243)
Naveen Kumar (66313)
Taruna Anand (828898)
S Pavulraj (4383166)
Adam Rash (3493286)
Debra Elton (29877)
Nicola Rash (4383160)
Sandeep Bhatia (2633815)
Richa Sood (2633812)
Raj Singh (103123)
Bhupendra Tripathi (4383157)

August 2017

Comparison of Relative Synonymous Codon Usage (RSCU) patterns of EIVs polymerase genes with their ho...

Additional file 4: of Structural variation of centromeric endogenous retroviruses in human populations and their impact on cutaneous T-cell lymphoma, SĂŠzary syndrome, and HIV infection

Mark Kaplan (6660752)
Mark Kaminski (6660755)
Judith Estes (6660758)
Scott Gitlin (6660761)
Joseph Zahn (6660764)
James Elder (3555407)
Trilokraj Tejasvi (6578087)
Elizabeth Gensterblum (3500609)
Amr Sawalha (3500606)
Joseph McGowan (6660767)
Michael Dosik (6660770)
Haner Direskeneli (614503)
Guher Direskeneli (6660773)
Sally Adebamowo (6660776)
Clement Adebamowo (245336)
Mohammad Sajadi (22826)
Rafael Contreras-Galindo (6411797)

May 2019

Figure S2. Highlight plot of HERV-K HML-2 3p25.3 sequences. The highlight plot displays the differen...

Additional file 1: of Close evolutionary relationship between rice black-streaked dwarf virus and southern rice black-streaked dwarf virus based on analysis of their bicistronic RNAs

Zenghui Wang (567688)
Chengming Yu (3503594)
Yuanhao Peng (6643082)
Chengshi Ding (806735)
Qingliang Li (36731)
Deya Wang (3503591)
Xuefeng Yuan (714724)

April 2019

Table S1. Relative synonymous codon usage (RSCU) values for each codon in S5, S7 and S9 of RBSDV and...

Selective Factors Associated with the Evolution of Codon Usage in Natural Populations of Arboviruses.

Lauro Velazquez-Salinas
Selene Zarate
Michael Eschbaumer
Francisco Pereira Lobo
Douglas P Gladue
Jonathan Arzt
Isabel S Novella
Luis L Rodriguez

Arboviruses (arthropod borne viruses) have life cycles that include both vertebrate and invertebrate...

Image_1_A comprehensive analysis of Usutu virus (USUV) genomes revealed lineage-specific codon usage patterns and host adaptations.JPEG

Jianglin Zhou (8534235)
Yaling Xing (185753)
Zhe Zhou (156517)
Shengqi Wang (13970)

January 2023

The Usutu virus (USUV) is an emerging arbovirus virus maintained in the environment of Afro-Eurasia ...

Table_1_A comprehensive analysis of Usutu virus (USUV) genomes revealed lineage-specific codon usage patterns and host adaptations.XLSX

Jianglin Zhou (8534235)
Yaling Xing (185753)
Zhe Zhou (156517)
Shengqi Wang (13970)

January 2023

The Usutu virus (USUV) is an emerging arbovirus virus maintained in the environment of Afro-Eurasia ...

Analysis of Synonymous Codon Usage Bias of Zika Virus and Its Adaption to the Hosts.

Hongju Wang
Siqing Liu
Bo Zhang
Wenqiang Wei

January 2016

Zika virus (ZIKV) is a mosquito-borne virus (arbovirus) in the family Flaviviridae, and the symptoms...

Image_6_A comprehensive analysis of Usutu virus (USUV) genomes revealed lineage-specific codon usage patterns and host adaptations.JPEG

Jianglin Zhou (8534235)
Yaling Xing (185753)
Zhe Zhou (156517)
Shengqi Wang (13970)

January 2023

The Usutu virus (USUV) is an emerging arbovirus virus maintained in the environment of Afro-Eurasia ...

Image_3_A comprehensive analysis of Usutu virus (USUV) genomes revealed lineage-specific codon usage patterns and host adaptations.JPEG

Jianglin Zhou (8534235)
Yaling Xing (185753)
Zhe Zhou (156517)
Shengqi Wang (13970)

January 2023

The Usutu virus (USUV) is an emerging arbovirus virus maintained in the environment of Afro-Eurasia ...

Additional file 6: of Patterns of microsatellite distribution across eukaryotic genomes

Surabhi Srivastava (4435186)
Akshay Avvaru (6393773)
Divya Sowpati (4435189)
Rakesh Mishra (386293)

February 2019

Heatmap.json. Organisms and their SSR information, to be viewed as a heatmap in Morpheus ( https://s...

Additional file 5: of Fine-mapping host genetic variation underlying outcomes to Mycobacterium bovis infection in dairy cows

S. Wilkinson (4171426)
S.C. Bishop (4171435)
A.R. Allen (4171417)
S.H. McBride (4171432)
R.A. Skuce (4171423)
M. Bermingham (4171429)
J.A. Woolliams (4171414)
E.J. Glass (4171420)

June 2017

Genome-wide association analysis for NVLs vs VLs a Manhattan plot displaying the –log10(P- value) of...

Additional file 7: of In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans

Lars Langhanki (3369824)
Petya Berger (5881013)
Janina Treffon (3369830)
Francesco Catania (375780)
Barbara Kahl (374193)
Alexander Mellmann (72273)

October 2018

SNPs and Indels between the consecutive t012 and t021Â S. aureus isolates within the timespan betwee...

Additional file 4: Figure S2. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Abstract

Extracted data

Additional file 4: Figure S2. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

Abstract

Extracted data

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