Ask
Search
My library

About
Statistics
Contact
Data Protection
Accessibility
Imprint
Changelog
Frontend: v1.31.3
Backend: v1.11.4

We use cookies to provide a better user experience.

Data Protection

75 chloroplast coding regions alignments in nexus format

Thomas J. Givnish (409345)
Daniel Spalink (3263151)
Mercedes Ames (409347)
Stephanie P. Lyon (409348)
Steven J. Hunter (3317061)
Alejandro Zuluaga (3272367)
William J. D. Iles (3272361)
Mark A. Clements (3317058)
Mary T. K. Arroyo (3317052)
James Leebens-Mack (117283)
Lorena Endara (3264915)
Ricardo Kriebel (3271884)
Kurt M. Neubig (825273)
W. Mark Whitten (825275)
Norris H. Williams (825274)
Kenneth M. Cameron (3317055)

Publication date

November 2016

DOI

10.5061/dryad.n9r58/1

Abstract

This file contains alignments of 75 chloroplast coding regions for orchid taxa plus Mapania (Cyperaceae) generated in this stud

Extracted data

Related items

SI_alignment_99_taxa_cp3

Yuan Nie (4438132)
Charles Foster (6310532)
Tianqi Zhu (3194412)
Ru Yao (463382)
Simon Ho (787728)
Bojian Zhong (264634)

May 2019

Alignment (in nexus format) of 3rd codon positions of 81 protein-coding chloroplast genes from 97 gr...

SI_alignment_99_taxa_cp3

Nie, Yuan
Foster, Charles
Zhu, Tianqi
Yao, Ru
Ho, Simon
Zhong, Bojian

May 2019

Alignment (in nexus format) of 3rd codon positions of 81 protein-coding chloroplast genes from 97 gr...

Ribosomal phylogeny alignment

Sait, Michelle
Livingstone, Morag
Clark, Ewan M.
Wheelhouse, Nick
Spalding, Lucy
Markey, Bryan
Magnino, Simone
Lainson, F. Alex
Myers, Garry S. A.
Longbottom, David

January 2014

MUSCLE alignment of concatenated protein sequences from 48 ribosomal proteins from species of the fa...

75 chloroplast coding regions alignments in nexus format

Givnish, Thomas J.
Spalink, Daniel
Ames, Mercedes
Lyon, Stephanie P.
Hunter, Steven J.
Zuluaga, Alejandro
Iles, William J. D.
Clements, Mark A.
Arroyo, Mary T. K.
Leebens-Mack, James
Endara, Lorena
Kriebel, Ricardo
Neubig, Kurt M.
Whitten, W. Mark
Williams, Norris H.
Cameron, Kenneth M.

July 2015

This file contains alignments of 75 chloroplast coding regions for orchid taxa plus Mapania (Cyperac...

Alignment_files

Landis, Jacob B.
Bell, Charles D.
Hernandez, Margarita
Zenil-Ferguson, Rosana
McCarthy, Elizabeth W.
Soltis, Douglas E.
Soltis, Pamela S.

July 2018

Alignment files in Nexus format for each of the 7 loci used in the study, and two concatenated files...

SI_alignment_195_taxa

Charles S. P. Foster (3194688)
Hervé Sauquet (491449)
Marlien van der Merwe (3194691)
Hannah McPherson (752656)
Maurizio Rossetto (491448)
Simon Y. W. Ho (40132)

October 2016

Alignment (in nexus format) of 76 protein-coding chloroplast genes from 193 angiosperm (including 11...

Nexus file of 114 chloroplast genes and gene positions

Jason R. Comer (3283158)
Wendy B. Zomlefer (3283155)
Craig F. Barrett (3243966)
Jerrold I. Davis (3249597)
Dennis W. Stevenson (468232)
Karolina Heyduk (3198543)
James H. Leebens-Mack (843164)

October 2016

Nexus file containing the 114 genes data set followed by the position of each gene with the matrix

Nexus file of 114 chloroplast genes and gene positions

Comer, Jason R.
Zomlefer, Wendy B.
Barrett, Craig F.
Davis, Jerrold I.
Stevenson, Dennis W.
Heyduk, Karolina
Leebens-Mack, James H.

May 2015

Nexus file containing the 114 genes data set followed by the position of each gene with the matrix

Neotropical Miliuseae_concatenated aligment

Ortiz-Rodríguez, Andrés E.
Ruiz-Sanchez, E
Ornelas, Juan F.

May 2017

This Nexus file is a concatenated alignment containing chloroplast (ndhF, matK, psbA-trnH, rbcL, rps...

Data File 3 cp23S Clade G

Ramsby, Blake D.
Hill, Malcolm S.
Thornhill, Daniel J.
Steenuizen, Sieuwkje F.
Achlatis, Michelle
Lewis, Allison M.
LaJeunesse, Todd C.

August 2017

Data File 3. Nexus file of aligned sequences of the partial chloroplast cp23S used to generate phyl...

Data File 3 cp23S Clade G

Blake D. Ramsby (626331)
Malcolm S. Hill (275999)
Daniel J. Thornhill (190625)
Sieuwkje F. Steenuizen (4351681)
Michelle Achlatis (4351684)
Allison M. Lewis (3290415)
Todd C. LaJeunesse (114764)

August 2017

Data File 3. Nexus file of aligned sequences of the partial chloroplast cp23S used to generate phyl...

Florida fern chloroplast data

Emily Sessa (5085488)
Sally M. Chambers (5085494)
Daijiang Lee (5279711)
Lauren Trotta (5279708)
Lorena Endara (3264915)
J. Gordon Burleigh (3198300)
Benjamin Baiser (218604)

May 2018

Nexus file of aligned sequence data from five plastid markers: coding regions atpA, atpB, and rbcL, ...

SI_alignment_99_taxa_cp12

Yuan Nie (4438132)
Charles Foster (6310532)
Tianqi Zhu (3194412)
Ru Yao (463382)
Simon Ho (787728)
Bojian Zhong (264634)

May 2019

Alignment (in nexus format) of 1st and 2nd codon positions of 81 protein-coding chloroplast genes fr...

Florida fern chloroplast data

Sessa, Emily
Chambers, Sally M.
Lee, Daijiang
Trotta, Lauren
Endara, Lorena
Burleigh, J. Gordon
Baiser, Benjamin

May 2018

Nexus file of aligned sequence data from five plastid markers: coding regions atpA, atpB, and rbcL, ...

SI_alignment_99_taxa_cp12

Nie, Yuan
Foster, Charles
Zhu, Tianqi
Yao, Ru
Ho, Simon
Zhong, Bojian

May 2019

Alignment (in nexus format) of 1st and 2nd codon positions of 81 protein-coding chloroplast genes fr...

SI_alignment_99_taxa_cp3

Yuan Nie (4438132)
Charles Foster (6310532)
Tianqi Zhu (3194412)
Ru Yao (463382)
Simon Ho (787728)
Bojian Zhong (264634)

May 2019

Alignment (in nexus format) of 3rd codon positions of 81 protein-coding chloroplast genes from 97 gr...

SI_alignment_99_taxa_cp3

Nie, Yuan
Foster, Charles
Zhu, Tianqi
Yao, Ru
Ho, Simon
Zhong, Bojian

May 2019

Alignment (in nexus format) of 3rd codon positions of 81 protein-coding chloroplast genes from 97 gr...

Ribosomal phylogeny alignment

Sait, Michelle
Livingstone, Morag
Clark, Ewan M.
Wheelhouse, Nick
Spalding, Lucy
Markey, Bryan
Magnino, Simone
Lainson, F. Alex
Myers, Garry S. A.
Longbottom, David

January 2014

MUSCLE alignment of concatenated protein sequences from 48 ribosomal proteins from species of the fa...

75 chloroplast coding regions alignments in nexus format

Givnish, Thomas J.
Spalink, Daniel
Ames, Mercedes
Lyon, Stephanie P.
Hunter, Steven J.
Zuluaga, Alejandro
Iles, William J. D.
Clements, Mark A.
Arroyo, Mary T. K.
Leebens-Mack, James
Endara, Lorena
Kriebel, Ricardo
Neubig, Kurt M.
Whitten, W. Mark
Williams, Norris H.
Cameron, Kenneth M.

July 2015

This file contains alignments of 75 chloroplast coding regions for orchid taxa plus Mapania (Cyperac...

Alignment_files

Landis, Jacob B.
Bell, Charles D.
Hernandez, Margarita
Zenil-Ferguson, Rosana
McCarthy, Elizabeth W.
Soltis, Douglas E.
Soltis, Pamela S.

July 2018

Alignment files in Nexus format for each of the 7 loci used in the study, and two concatenated files...

SI_alignment_195_taxa

Charles S. P. Foster (3194688)
Hervé Sauquet (491449)
Marlien van der Merwe (3194691)
Hannah McPherson (752656)
Maurizio Rossetto (491448)
Simon Y. W. Ho (40132)

October 2016

Alignment (in nexus format) of 76 protein-coding chloroplast genes from 193 angiosperm (including 11...

Nexus file of 114 chloroplast genes and gene positions

Jason R. Comer (3283158)
Wendy B. Zomlefer (3283155)
Craig F. Barrett (3243966)
Jerrold I. Davis (3249597)
Dennis W. Stevenson (468232)
Karolina Heyduk (3198543)
James H. Leebens-Mack (843164)

October 2016

Nexus file containing the 114 genes data set followed by the position of each gene with the matrix

Nexus file of 114 chloroplast genes and gene positions

Comer, Jason R.
Zomlefer, Wendy B.
Barrett, Craig F.
Davis, Jerrold I.
Stevenson, Dennis W.
Heyduk, Karolina
Leebens-Mack, James H.

May 2015

Nexus file containing the 114 genes data set followed by the position of each gene with the matrix

Neotropical Miliuseae_concatenated aligment

Ortiz-Rodríguez, Andrés E.
Ruiz-Sanchez, E
Ornelas, Juan F.

May 2017

This Nexus file is a concatenated alignment containing chloroplast (ndhF, matK, psbA-trnH, rbcL, rps...

Data File 3 cp23S Clade G

Ramsby, Blake D.
Hill, Malcolm S.
Thornhill, Daniel J.
Steenuizen, Sieuwkje F.
Achlatis, Michelle
Lewis, Allison M.
LaJeunesse, Todd C.

August 2017

Data File 3. Nexus file of aligned sequences of the partial chloroplast cp23S used to generate phyl...

Data File 3 cp23S Clade G

Blake D. Ramsby (626331)
Malcolm S. Hill (275999)
Daniel J. Thornhill (190625)
Sieuwkje F. Steenuizen (4351681)
Michelle Achlatis (4351684)
Allison M. Lewis (3290415)
Todd C. LaJeunesse (114764)

August 2017

Data File 3. Nexus file of aligned sequences of the partial chloroplast cp23S used to generate phyl...

Florida fern chloroplast data

Emily Sessa (5085488)
Sally M. Chambers (5085494)
Daijiang Lee (5279711)
Lauren Trotta (5279708)
Lorena Endara (3264915)
J. Gordon Burleigh (3198300)
Benjamin Baiser (218604)

May 2018

Nexus file of aligned sequence data from five plastid markers: coding regions atpA, atpB, and rbcL, ...

SI_alignment_99_taxa_cp12

Yuan Nie (4438132)
Charles Foster (6310532)
Tianqi Zhu (3194412)
Ru Yao (463382)
Simon Ho (787728)
Bojian Zhong (264634)

May 2019

Alignment (in nexus format) of 1st and 2nd codon positions of 81 protein-coding chloroplast genes fr...

Florida fern chloroplast data

Sessa, Emily
Chambers, Sally M.
Lee, Daijiang
Trotta, Lauren
Endara, Lorena
Burleigh, J. Gordon
Baiser, Benjamin

May 2018

Nexus file of aligned sequence data from five plastid markers: coding regions atpA, atpB, and rbcL, ...

SI_alignment_99_taxa_cp12

Nie, Yuan
Foster, Charles
Zhu, Tianqi
Yao, Ru
Ho, Simon
Zhong, Bojian

May 2019

Alignment (in nexus format) of 1st and 2nd codon positions of 81 protein-coding chloroplast genes fr...

SI_alignment_99_taxa_cp3

Yuan Nie (4438132)
Charles Foster (6310532)
Tianqi Zhu (3194412)
Ru Yao (463382)
Simon Ho (787728)
Bojian Zhong (264634)

May 2019

Alignment (in nexus format) of 3rd codon positions of 81 protein-coding chloroplast genes from 97 gr...

SI_alignment_99_taxa_cp3

Nie, Yuan
Foster, Charles
Zhu, Tianqi
Yao, Ru
Ho, Simon
Zhong, Bojian

May 2019

Alignment (in nexus format) of 3rd codon positions of 81 protein-coding chloroplast genes from 97 gr...

Ribosomal phylogeny alignment

Sait, Michelle
Livingstone, Morag
Clark, Ewan M.
Wheelhouse, Nick
Spalding, Lucy
Markey, Bryan
Magnino, Simone
Lainson, F. Alex
Myers, Garry S. A.
Longbottom, David

January 2014

MUSCLE alignment of concatenated protein sequences from 48 ribosomal proteins from species of the fa...