Additional file 1: Table S1. of Host genetic diversity influences the severity of Pseudomonas aeruginosa pneumonia in the Collaborative Cross mice

Table_4_Persistence and Microevolution of Pseudomonas aeruginosa in the Cystic Fibrosis Lung: A Single-Patient Longitudinal Genomic Study.pdf

Irene Bianconi (108469)
Silvia D’Arcangelo (6196736)
Alfonso Esposito (3322911)
Mattia Benedet (2967495)
Elena Piffer (6196739)
Grazia Dinnella (6196742)
Paola Gualdi (6196745)
Michele Schinella (6196748)
Ermanno Baldo (6196751)
Claudio Donati (66818)
Olivier Jousson (281189)

January 2019

Background: During its persistence in cystic fibrosis (CF) airways, P. aeruginosa develops a series ...

Additional file 2: of Diversity of virulence level phenotype of hypervirulent Klebsiella pneumoniae from different sequence type lineage

Qiucheng Shi (3233457)
Peng Lan (5699819)
Danyan Huang (5148011)
Xiaoting Hua (435699)
Yan Jiang (12139)
Jiancang Zhou (3233460)
Yunsong Yu (496103)

August 2018

Table S1. PCR primers used for studying Serotype and Virulence-Associated Genes of Klebsiella pneumo...

Additional file 5: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

Bryan Wee (3473117)
Anna Tai (4569634)
Laura Sherrard (4569637)
Nouri Ben Zakour (5704643)
Kirt Hanks (5704646)
Timothy Kidd (4569640)
Kay Ramsay (4569643)
Iain Lamont (5704649)
David Whiley (171092)
Scott Bell (3475514)
Scott Beatson (5704652)

September 2018

Table S3. Details of co-pathogens in people with M3L7/M3L1 infection at time of isolation and in the...

Additional file 3: Table S3. of Host genetic diversity influences the severity of Pseudomonas aeruginosa pneumonia in the Collaborative Cross mice

Nicola LorĂ¨ (3405530)
Fuad Iraqi (237899)
Alessandra Bragonzi (108447)

August 2015

Bonferroniâs Multiple Comparison Tests of recorded traits (MST and CBW1) among CC lines after P. a...

Additional file 2: of Mapping genetic determinants of host susceptibility to Pseudomonas aeruginosa lung infection in mice

Maura De Simone (531456)
Lorenza Spagnuolo (527371)
Nicola LorĂ¨ (3405530)
Cristina Cigana (168420)
Ida De Fino (168422)
Karl Broman (259469)
Fuad Iraqi (237899)
Alessandra Bragonzi (108447)

May 2016

Recombination map position of 38 SNPs markers in the locus of interest of F2 Chromosome 6. (DOCX 16Â...

Host genetic background influences the response to the opportunistic Pseudomonas aeruginosa infection altering cell-mediated immunity and bacterial replication

Maura De Simone, #1
Lorenza Spagnuolo, ¶
Nicola Ivan Lorè, ¶
Giacomo Rossi, 1
Cristina Cigana, 2
Ida De Fino, 1
Fuad A Iraqi, 1 Fuad A. Iraqi
and Alessandra Bragonzi, 3

January 2014

Pseudomonas aeruginosa is a common cause of healthcare-associated infections including pneumonia, bl...

Host genetic background influences the response to the opportunistic Pseudomonas aeruginosa infection altering cell-mediated immunity and bacterial replication

De Simone, Maura
Spagnuolo, Lorenza
Lorè, Nicola Ivan
Rossi, Giacomo
Cigana, Cristina
De Fino, Ida
Iraqi, Fuad A
Bragonzi, Alessandra

January 2014

Pseudomonas aeruginosa is a common cause of healthcare-associated infections including pneumonia, bl...

Host genetic background influences the response to the opportunistic Pseudomonas aeruginosa infection altering cell-mediated immunity and bacterial replication.

Maura De Simone
Lorenza Spagnuolo
Nicola Ivan Lorè
Giacomo Rossi
Cristina Cigana
Ida De Fino
Fuad A Iraqi
Alessandra Bragonzi

Pseudomonas aeruginosa is a common cause of healthcare-associated infections including pneumonia, bl...

Additional file 3: of Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection

Irene Bianconi (108469)
Julie Jeukens (520628)
Luca Freschi (513340)
Beatriz AlcalĂĄ-Franco (3544031)
Marcella Facchini (2461264)
Brian Boyle (276326)
Antonio Molinaro (255584)
Irena Kukavica-Ibrulj (300135)
Burkhard TĂźmmler (3544028)
Roger Levesque (3487352)
Alessandra Bragonzi (108447)

December 2015

Genomic features of RP strains compared to others complete P. aeruginosa genomes [ 4 , 12 , 19 , 23 ...

Additional file 1: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

Bryan Wee (3473117)
Anna Tai (4569634)
Laura Sherrard (4569637)
Nouri Ben Zakour (5704643)
Kirt Hanks (5704646)
Timothy Kidd (4569640)
Kay Ramsay (4569643)
Iain Lamont (5704649)
David Whiley (171092)
Scott Bell (3475514)
Scott Beatson (5704652)

September 2018

Table S1. Details of Pseudomonas aeruginosa isolates and genome assembly metrics used in this study....

Table_1_Persistence and Microevolution of Pseudomonas aeruginosa in the Cystic Fibrosis Lung: A Single-Patient Longitudinal Genomic Study.pdf

Irene Bianconi (108469)
Silvia D’Arcangelo (6196736)
Alfonso Esposito (3322911)
Mattia Benedet (2967495)
Elena Piffer (6196739)
Grazia Dinnella (6196742)
Paola Gualdi (6196745)
Michele Schinella (6196748)
Ermanno Baldo (6196751)
Claudio Donati (66818)
Olivier Jousson (281189)

January 2019

Background: During its persistence in cystic fibrosis (CF) airways, P. aeruginosa develops a series ...

Additional file 5: of Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection

Irene Bianconi (108469)
Julie Jeukens (520628)
Luca Freschi (513340)
Beatriz AlcalĂĄ-Franco (3544031)
Marcella Facchini (2461264)
Brian Boyle (276326)
Antonio Molinaro (255584)
Irena Kukavica-Ibrulj (300135)
Burkhard TĂźmmler (3544028)
Roger Levesque (3487352)
Alessandra Bragonzi (108447)

December 2015

Non-synonymous SNPs between prototype strain PA14 and strains RP73, RP45 and RP1. (XLS 2195Â kb

Table_1_Comparative Genomic Analyses Reveal Core-Genome-Wide Genes Under Positive Selection and Major Regulatory Hubs in Outlier Strains of Pseudomonas aeruginosa.DOCX

Utkarsh Sood (6305495)
Princy Hira (6305498)
Roshan Kumar (626309)
Abhay Bajaj (6305501)
Desiraju Lakshmi Narsimha Rao (3316932)
Rup Lal (130961)
Mallikarjun Shakarad (6305504)

February 2019

Genomic information for outlier strains of Pseudomonas aeruginosa is exiguous when compared with cla...

Additional file 1: Figure S1. of High virulence sub-populations in Pseudomonas aeruginosa long-term cystic fibrosis airway infections

SiobhĂĄn OâBrien (3717601)
David Williams (229939)
Joanne Fothergill (3717598)
Steve Paterson (49478)
Craig Winstanley (75404)
Michael Brockhurst (3318483)

February 2017

Results of principal component analysis whereby all 188 isolates were pooled to investigate associat...

Additional file 1: of Delay in antibiotic therapy results in fatal disease outcome in murine pneumococcal pneumonia

Sarah Berger (3146913)
Cengiz Goekeri (5919629)
Shishir Gupta (5919632)
Julio Vera (86706)
Kristina Dietert (599646)
Ulrike Behrendt (5919635)
Jasmin Lienau (65992)
Sandra-Maria Wienhold (4492024)
Achim Gruber (3431669)
Norbert Suttorp (167418)
Martin Witzenrath (167419)
Geraldine Nouailles (5907740)

November 2018

Supplementary Materials and methods. Table S1. Total numbers of mice analyzed per group per analysis...

Table_4_Persistence and Microevolution of Pseudomonas aeruginosa in the Cystic Fibrosis Lung: A Single-Patient Longitudinal Genomic Study.pdf

Irene Bianconi (108469)
Silvia D’Arcangelo (6196736)
Alfonso Esposito (3322911)
Mattia Benedet (2967495)
Elena Piffer (6196739)
Grazia Dinnella (6196742)
Paola Gualdi (6196745)
Michele Schinella (6196748)
Ermanno Baldo (6196751)
Claudio Donati (66818)
Olivier Jousson (281189)

January 2019

Background: During its persistence in cystic fibrosis (CF) airways, P. aeruginosa develops a series ...

Additional file 2: of Diversity of virulence level phenotype of hypervirulent Klebsiella pneumoniae from different sequence type lineage

Qiucheng Shi (3233457)
Peng Lan (5699819)
Danyan Huang (5148011)
Xiaoting Hua (435699)
Yan Jiang (12139)
Jiancang Zhou (3233460)
Yunsong Yu (496103)

August 2018

Table S1. PCR primers used for studying Serotype and Virulence-Associated Genes of Klebsiella pneumo...

Additional file 5: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

Bryan Wee (3473117)
Anna Tai (4569634)
Laura Sherrard (4569637)
Nouri Ben Zakour (5704643)
Kirt Hanks (5704646)
Timothy Kidd (4569640)
Kay Ramsay (4569643)
Iain Lamont (5704649)
David Whiley (171092)
Scott Bell (3475514)
Scott Beatson (5704652)

September 2018

Table S3. Details of co-pathogens in people with M3L7/M3L1 infection at time of isolation and in the...

Additional file 3: Table S3. of Host genetic diversity influences the severity of Pseudomonas aeruginosa pneumonia in the Collaborative Cross mice

Nicola LorĂ¨ (3405530)
Fuad Iraqi (237899)
Alessandra Bragonzi (108447)

August 2015

Bonferroniâs Multiple Comparison Tests of recorded traits (MST and CBW1) among CC lines after P. a...

Additional file 2: of Mapping genetic determinants of host susceptibility to Pseudomonas aeruginosa lung infection in mice

Maura De Simone (531456)
Lorenza Spagnuolo (527371)
Nicola LorĂ¨ (3405530)
Cristina Cigana (168420)
Ida De Fino (168422)
Karl Broman (259469)
Fuad Iraqi (237899)
Alessandra Bragonzi (108447)

May 2016

Recombination map position of 38 SNPs markers in the locus of interest of F2 Chromosome 6. (DOCX 16Â...

Host genetic background influences the response to the opportunistic Pseudomonas aeruginosa infection altering cell-mediated immunity and bacterial replication

Maura De Simone, #1
Lorenza Spagnuolo, ¶
Nicola Ivan Lorè, ¶
Giacomo Rossi, 1
Cristina Cigana, 2
Ida De Fino, 1
Fuad A Iraqi, 1 Fuad A. Iraqi
and Alessandra Bragonzi, 3

January 2014

Pseudomonas aeruginosa is a common cause of healthcare-associated infections including pneumonia, bl...

Host genetic background influences the response to the opportunistic Pseudomonas aeruginosa infection altering cell-mediated immunity and bacterial replication

De Simone, Maura
Spagnuolo, Lorenza
Lorè, Nicola Ivan
Rossi, Giacomo
Cigana, Cristina
De Fino, Ida
Iraqi, Fuad A
Bragonzi, Alessandra

January 2014

Pseudomonas aeruginosa is a common cause of healthcare-associated infections including pneumonia, bl...

Host genetic background influences the response to the opportunistic Pseudomonas aeruginosa infection altering cell-mediated immunity and bacterial replication.

Maura De Simone
Lorenza Spagnuolo
Nicola Ivan Lorè
Giacomo Rossi
Cristina Cigana
Ida De Fino
Fuad A Iraqi
Alessandra Bragonzi

Pseudomonas aeruginosa is a common cause of healthcare-associated infections including pneumonia, bl...

Additional file 3: of Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection

Irene Bianconi (108469)
Julie Jeukens (520628)
Luca Freschi (513340)
Beatriz AlcalĂĄ-Franco (3544031)
Marcella Facchini (2461264)
Brian Boyle (276326)
Antonio Molinaro (255584)
Irena Kukavica-Ibrulj (300135)
Burkhard TĂźmmler (3544028)
Roger Levesque (3487352)
Alessandra Bragonzi (108447)

December 2015

Genomic features of RP strains compared to others complete P. aeruginosa genomes [ 4 , 12 , 19 , 23 ...

Additional file 1: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

Bryan Wee (3473117)
Anna Tai (4569634)
Laura Sherrard (4569637)
Nouri Ben Zakour (5704643)
Kirt Hanks (5704646)
Timothy Kidd (4569640)
Kay Ramsay (4569643)
Iain Lamont (5704649)
David Whiley (171092)
Scott Bell (3475514)
Scott Beatson (5704652)

September 2018

Table S1. Details of Pseudomonas aeruginosa isolates and genome assembly metrics used in this study....

Table_1_Persistence and Microevolution of Pseudomonas aeruginosa in the Cystic Fibrosis Lung: A Single-Patient Longitudinal Genomic Study.pdf

Irene Bianconi (108469)
Silvia D’Arcangelo (6196736)
Alfonso Esposito (3322911)
Mattia Benedet (2967495)
Elena Piffer (6196739)
Grazia Dinnella (6196742)
Paola Gualdi (6196745)
Michele Schinella (6196748)
Ermanno Baldo (6196751)
Claudio Donati (66818)
Olivier Jousson (281189)

January 2019

Background: During its persistence in cystic fibrosis (CF) airways, P. aeruginosa develops a series ...

Additional file 5: of Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection

Irene Bianconi (108469)
Julie Jeukens (520628)
Luca Freschi (513340)
Beatriz AlcalĂĄ-Franco (3544031)
Marcella Facchini (2461264)
Brian Boyle (276326)
Antonio Molinaro (255584)
Irena Kukavica-Ibrulj (300135)
Burkhard TĂźmmler (3544028)
Roger Levesque (3487352)
Alessandra Bragonzi (108447)

December 2015

Non-synonymous SNPs between prototype strain PA14 and strains RP73, RP45 and RP1. (XLS 2195Â kb

Table_1_Comparative Genomic Analyses Reveal Core-Genome-Wide Genes Under Positive Selection and Major Regulatory Hubs in Outlier Strains of Pseudomonas aeruginosa.DOCX

Utkarsh Sood (6305495)
Princy Hira (6305498)
Roshan Kumar (626309)
Abhay Bajaj (6305501)
Desiraju Lakshmi Narsimha Rao (3316932)
Rup Lal (130961)
Mallikarjun Shakarad (6305504)

February 2019

Genomic information for outlier strains of Pseudomonas aeruginosa is exiguous when compared with cla...

Additional file 1: Figure S1. of High virulence sub-populations in Pseudomonas aeruginosa long-term cystic fibrosis airway infections

SiobhĂĄn OâBrien (3717601)
David Williams (229939)
Joanne Fothergill (3717598)
Steve Paterson (49478)
Craig Winstanley (75404)
Michael Brockhurst (3318483)

February 2017

Results of principal component analysis whereby all 188 isolates were pooled to investigate associat...

Additional file 1: of Delay in antibiotic therapy results in fatal disease outcome in murine pneumococcal pneumonia

Sarah Berger (3146913)
Cengiz Goekeri (5919629)
Shishir Gupta (5919632)
Julio Vera (86706)
Kristina Dietert (599646)
Ulrike Behrendt (5919635)
Jasmin Lienau (65992)
Sandra-Maria Wienhold (4492024)
Achim Gruber (3431669)
Norbert Suttorp (167418)
Martin Witzenrath (167419)
Geraldine Nouailles (5907740)

November 2018

Supplementary Materials and methods. Table S1. Total numbers of mice analyzed per group per analysis...

Table_4_Persistence and Microevolution of Pseudomonas aeruginosa in the Cystic Fibrosis Lung: A Single-Patient Longitudinal Genomic Study.pdf

Irene Bianconi (108469)
Silvia D’Arcangelo (6196736)
Alfonso Esposito (3322911)
Mattia Benedet (2967495)
Elena Piffer (6196739)
Grazia Dinnella (6196742)
Paola Gualdi (6196745)
Michele Schinella (6196748)
Ermanno Baldo (6196751)
Claudio Donati (66818)
Olivier Jousson (281189)

January 2019

Background: During its persistence in cystic fibrosis (CF) airways, P. aeruginosa develops a series ...

Additional file 2: of Diversity of virulence level phenotype of hypervirulent Klebsiella pneumoniae from different sequence type lineage

Qiucheng Shi (3233457)
Peng Lan (5699819)
Danyan Huang (5148011)
Xiaoting Hua (435699)
Yan Jiang (12139)
Jiancang Zhou (3233460)
Yunsong Yu (496103)

August 2018

Table S1. PCR primers used for studying Serotype and Virulence-Associated Genes of Klebsiella pneumo...

Additional file 5: of Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

Bryan Wee (3473117)
Anna Tai (4569634)
Laura Sherrard (4569637)
Nouri Ben Zakour (5704643)
Kirt Hanks (5704646)
Timothy Kidd (4569640)
Kay Ramsay (4569643)
Iain Lamont (5704649)
David Whiley (171092)
Scott Bell (3475514)
Scott Beatson (5704652)

September 2018

Table S3. Details of co-pathogens in people with M3L7/M3L1 infection at time of isolation and in the...

Additional file 1: Table S1. of Host genetic diversity influences the severity of Pseudomonas aeruginosa pneumonia in the Collaborative Cross mice

Abstract

Extracted data

Additional file 1: Table S1. of Host genetic diversity influences the severity of Pseudomonas aeruginosa pneumonia in the Collaborative Cross mice

Abstract

Extracted data

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