Protein coding mRNAs showing significant differences of polysome to cytosol ratios, adjusted p-value < 0.05.

mRNA expression differences of ammonia metabolizing enzymes detected in the microarray.

Giora van Straten (580550)
Frank G. van Steenbeek (194928)
Guy C. M. Grinwis (165277)
Robert P. Favier (144780)
Anne Kummeling (381713)
Ingrid H. van Gils (580551)
Hille Fieten (144796)
Marian J. A. Groot Koerkamp (117136)
Frank C. P. Holstege (117137)
Jan Rothuizen (66188)
Bart Spee (66184)

June 2014

M value is the average 2 log ratio of gene expression in patients versus healthy control with p-v...

Proteins whose expression is altered by the expression of four or more oncogenes.

Andrew Pierce (156195)
Andrew Williamson (156199)
Ewa Jaworska (156204)
John R. Griffiths (156207)
Sam Taylor (156210)
Michael Walker (20779)
Mark Aspinall O’Dea (156215)
Elaine Spooncer (156220)
Richard D. Unwin (156225)
Toryn Poolman (156231)
David Ray (11501)
Anthony D. Whetton (156235)

June 2012

Proteins shown are those where a confident assessment of a common decrease or increase in 4 or mo...

The ratio of p21cip1 protein to mRNA in the cells transfected with the different variants of p21cip1.

Sharon C. Yates (686687)
Amen Zafar (686688)
Erzsebet M. Rabai (686689)
James B. Foxall (686690)
Sheila Nagy (686691)
Karen E. Morrison (251335)
Carl Clarke (686692)
Margaret M. Esiri (686693)
Sharon Christie (686694)
A. David Smith (116096)
Zsuzsanna Nagy (64689)

January 2015

The p21cip1 protein and mRNA results were normalised to the equivalent value for beta-...

mRNA isoforms differentially loaded onto polysomes, and in addition displaying twofold different allelic RNA ratios (major/minor alleles) between cytosol and polysomes.

Roshan Mascarenhas (463060)
Maciej Pietrzak (212740)
Ryan M. Smith (272322)
Amy Webb (791450)
Danxin Wang (179626)
Audrey C. Papp (179611)
Julia K. Pinsonneault (179618)
Michal Seweryn (791451)
Grzegorz Rempala (212741)
Wolfgang Sadee (179657)

September 2015

A. Isoforms underrepresented on polysomes. B. Isoforms enriched on polysomes. Allel...

Analysis of mRNAs in polysome gradients.

Igor Minia (399074)
Clementine Merce (553748)
Monica Terrao (784966)
Christine Clayton (101671)

September 2016

(A) For each gene in the "unique gene" set, the percentage of the mRNA in polysomes (heavy and li...

mRNA fold change versus protein fold change.

Bobak D. Kechavarzi (6240272)
Huanmei Wu (5991764)
Thompson N. Doman (569559)

January 2019

This represents the matched protein (y-axis) and mRNA (x-axis) z-score normalized, log2 fold changes...

Comparison between cytosolic proteins theoretical expression levels and their aggregation parameters.

Natalia S. de Groot (366700)
Salvador Ventura (39268)

February 2013

A) Cumulative distributions of Na4vSS values in the 10% cytosolic proteins with the highest (blac...

Comparison of transcript and protein signals.

Sonya T. Dyhrman (174737)
Bethany D. Jenkins (174742)
Tatiana A. Rynearson (174745)
Mak A. Saito (174749)
Melissa L. Mercier (174752)
Harriet Alexander (174753)
LeAnn P. Whitney (174755)
Andrea Drzewianowski (174757)
Vladimir V. Bulygin (174761)
Erin M. Bertrand (174765)
Zhijin Wu (23782)
Claudia Benitez-Nelson (174772)
Abigail Heithoff (174777)

March 2012

Comparison of proteome and transcriptome changes in response to P deficiency. Fold-change present...

Relative mRNA content of genes (qPCR data) that encode metabolic proteins.

Irina V. Ogneva (556531)
Stepan N. Belyakin (497368)
Svetlana V. Sarantseva (3353315)

November 2016

(A) The Cyt-c mRNA content in 3LS, 3LS+12h, 3LS+24h, 5LSS, 5LFS and 5LSF groups was the sa...

Comparison of the distributions of protein-coding genes in chromosomes with those of proteins from forty placentas (20 normal and 20 PE) identified with LC-MS/MS in this work.

Fuqiang Wang (124651)
Zhonghua Shi (208558)
Ping Wang (42415)
Wei You (474340)
Gaolin Liang (408113)

October 2013

Comparison of the distributions of protein-coding genes in chromosomes with those of proteins fro...

Effect of features on the coding sequence to the protein expression level per mRNA.

Nhat H.M. Truong (17921685)
Nam T. Vo (17921688)
Binh T. Nguyen (840607)
Son T. Huynh (17921691)
Hoang D. Nguyen (1687678)

February 2024

Effect of features on the coding sequence to the protein expression level per mRNA.</p

Ribosomal proteins, translation, and energy related transcripts are overrepresented within the transcripts showing very low TE values.

Md. Shamimuzzaman (5003501)
Lila Vodkin (78271)

March 2018

Ribosomal proteins, translation, and energy related transcripts are overrepresented within the tr...

Cumulative distributions of mRNA expression levels for microarray probesets.

Carmen M. Dumaual (453503)
Boyd A. Steere (453504)
Chad D. Walls (453505)
Mu Wang (235245)
Zhong-Yin Zhang (453506)
Stephen K. Randall (453507)

September 2013

The cumulative distributions of the expression levels of mRNA probesets that were associated with...

Protein-coding genes that are differentially expressed in type I vs. type II males.

Joshua Faber-Hammond (825132)
Manoj P. Samanta (265601)
Elizabeth A. Whitchurch (825133)
Dustin Manning (825134)
Joseph A. Sisneros (390562)
Allison B. Coffin (86834)

November 2015

All genes shown here are significantly different at the p<0.05 level. *For this analysis we shown...

mRNA expression differences of ammonia metabolizing enzymes detected in the microarray.

Giora van Straten (580550)
Frank G. van Steenbeek (194928)
Guy C. M. Grinwis (165277)
Robert P. Favier (144780)
Anne Kummeling (381713)
Ingrid H. van Gils (580551)
Hille Fieten (144796)
Marian J. A. Groot Koerkamp (117136)
Frank C. P. Holstege (117137)
Jan Rothuizen (66188)
Bart Spee (66184)

June 2014

M value is the average 2 log ratio of gene expression in patients versus healthy control with p-v...

mRNA expression differences of ammonia metabolizing enzymes detected in the microarray.

Giora van Straten (580550)
Frank G. van Steenbeek (194928)
Guy C. M. Grinwis (165277)
Robert P. Favier (144780)
Anne Kummeling (381713)
Ingrid H. van Gils (580551)
Hille Fieten (144796)
Marian J. A. Groot Koerkamp (117136)
Frank C. P. Holstege (117137)
Jan Rothuizen (66188)
Bart Spee (66184)

June 2014

M value is the average 2 log ratio of gene expression in patients versus healthy control with p-v...

Proteins whose expression is altered by the expression of four or more oncogenes.

Andrew Pierce (156195)
Andrew Williamson (156199)
Ewa Jaworska (156204)
John R. Griffiths (156207)
Sam Taylor (156210)
Michael Walker (20779)
Mark Aspinall O’Dea (156215)
Elaine Spooncer (156220)
Richard D. Unwin (156225)
Toryn Poolman (156231)
David Ray (11501)
Anthony D. Whetton (156235)

June 2012

Proteins shown are those where a confident assessment of a common decrease or increase in 4 or mo...

The ratio of p21cip1 protein to mRNA in the cells transfected with the different variants of p21cip1.

Sharon C. Yates (686687)
Amen Zafar (686688)
Erzsebet M. Rabai (686689)
James B. Foxall (686690)
Sheila Nagy (686691)
Karen E. Morrison (251335)
Carl Clarke (686692)
Margaret M. Esiri (686693)
Sharon Christie (686694)
A. David Smith (116096)
Zsuzsanna Nagy (64689)

January 2015

The p21cip1 protein and mRNA results were normalised to the equivalent value for beta-...

mRNA isoforms differentially loaded onto polysomes, and in addition displaying twofold different allelic RNA ratios (major/minor alleles) between cytosol and polysomes.

Roshan Mascarenhas (463060)
Maciej Pietrzak (212740)
Ryan M. Smith (272322)
Amy Webb (791450)
Danxin Wang (179626)
Audrey C. Papp (179611)
Julia K. Pinsonneault (179618)
Michal Seweryn (791451)
Grzegorz Rempala (212741)
Wolfgang Sadee (179657)

September 2015

A. Isoforms underrepresented on polysomes. B. Isoforms enriched on polysomes. Allel...

Analysis of mRNAs in polysome gradients.

Igor Minia (399074)
Clementine Merce (553748)
Monica Terrao (784966)
Christine Clayton (101671)

September 2016

(A) For each gene in the "unique gene" set, the percentage of the mRNA in polysomes (heavy and li...

mRNA fold change versus protein fold change.

Bobak D. Kechavarzi (6240272)
Huanmei Wu (5991764)
Thompson N. Doman (569559)

January 2019

This represents the matched protein (y-axis) and mRNA (x-axis) z-score normalized, log2 fold changes...

Comparison between cytosolic proteins theoretical expression levels and their aggregation parameters.

Natalia S. de Groot (366700)
Salvador Ventura (39268)

February 2013

A) Cumulative distributions of Na4vSS values in the 10% cytosolic proteins with the highest (blac...

Comparison of transcript and protein signals.

Sonya T. Dyhrman (174737)
Bethany D. Jenkins (174742)
Tatiana A. Rynearson (174745)
Mak A. Saito (174749)
Melissa L. Mercier (174752)
Harriet Alexander (174753)
LeAnn P. Whitney (174755)
Andrea Drzewianowski (174757)
Vladimir V. Bulygin (174761)
Erin M. Bertrand (174765)
Zhijin Wu (23782)
Claudia Benitez-Nelson (174772)
Abigail Heithoff (174777)

March 2012

Comparison of proteome and transcriptome changes in response to P deficiency. Fold-change present...

Relative mRNA content of genes (qPCR data) that encode metabolic proteins.

Irina V. Ogneva (556531)
Stepan N. Belyakin (497368)
Svetlana V. Sarantseva (3353315)

November 2016

(A) The Cyt-c mRNA content in 3LS, 3LS+12h, 3LS+24h, 5LSS, 5LFS and 5LSF groups was the sa...

Comparison of the distributions of protein-coding genes in chromosomes with those of proteins from forty placentas (20 normal and 20 PE) identified with LC-MS/MS in this work.

Fuqiang Wang (124651)
Zhonghua Shi (208558)
Ping Wang (42415)
Wei You (474340)
Gaolin Liang (408113)

October 2013

Comparison of the distributions of protein-coding genes in chromosomes with those of proteins fro...

Effect of features on the coding sequence to the protein expression level per mRNA.

Nhat H.M. Truong (17921685)
Nam T. Vo (17921688)
Binh T. Nguyen (840607)
Son T. Huynh (17921691)
Hoang D. Nguyen (1687678)

February 2024

Effect of features on the coding sequence to the protein expression level per mRNA.</p

Ribosomal proteins, translation, and energy related transcripts are overrepresented within the transcripts showing very low TE values.

Md. Shamimuzzaman (5003501)
Lila Vodkin (78271)

March 2018

Ribosomal proteins, translation, and energy related transcripts are overrepresented within the tr...

Cumulative distributions of mRNA expression levels for microarray probesets.

Carmen M. Dumaual (453503)
Boyd A. Steere (453504)
Chad D. Walls (453505)
Mu Wang (235245)
Zhong-Yin Zhang (453506)
Stephen K. Randall (453507)

September 2013

The cumulative distributions of the expression levels of mRNA probesets that were associated with...

Protein-coding genes that are differentially expressed in type I vs. type II males.

Joshua Faber-Hammond (825132)
Manoj P. Samanta (265601)
Elizabeth A. Whitchurch (825133)
Dustin Manning (825134)
Joseph A. Sisneros (390562)
Allison B. Coffin (86834)

November 2015

All genes shown here are significantly different at the p<0.05 level. *For this analysis we shown...

mRNA expression differences of ammonia metabolizing enzymes detected in the microarray.

Giora van Straten (580550)
Frank G. van Steenbeek (194928)
Guy C. M. Grinwis (165277)
Robert P. Favier (144780)
Anne Kummeling (381713)
Ingrid H. van Gils (580551)
Hille Fieten (144796)
Marian J. A. Groot Koerkamp (117136)
Frank C. P. Holstege (117137)
Jan Rothuizen (66188)
Bart Spee (66184)

June 2014

M value is the average 2 log ratio of gene expression in patients versus healthy control with p-v...

mRNA expression differences of ammonia metabolizing enzymes detected in the microarray.

Giora van Straten (580550)
Frank G. van Steenbeek (194928)
Guy C. M. Grinwis (165277)
Robert P. Favier (144780)
Anne Kummeling (381713)
Ingrid H. van Gils (580551)
Hille Fieten (144796)
Marian J. A. Groot Koerkamp (117136)
Frank C. P. Holstege (117137)
Jan Rothuizen (66188)
Bart Spee (66184)

June 2014

M value is the average 2 log ratio of gene expression in patients versus healthy control with p-v...

Proteins whose expression is altered by the expression of four or more oncogenes.

Andrew Pierce (156195)
Andrew Williamson (156199)
Ewa Jaworska (156204)
John R. Griffiths (156207)
Sam Taylor (156210)
Michael Walker (20779)
Mark Aspinall O’Dea (156215)
Elaine Spooncer (156220)
Richard D. Unwin (156225)
Toryn Poolman (156231)
David Ray (11501)
Anthony D. Whetton (156235)

June 2012

Proteins shown are those where a confident assessment of a common decrease or increase in 4 or mo...

The ratio of p21cip1 protein to mRNA in the cells transfected with the different variants of p21cip1.

Sharon C. Yates (686687)
Amen Zafar (686688)
Erzsebet M. Rabai (686689)
James B. Foxall (686690)
Sheila Nagy (686691)
Karen E. Morrison (251335)
Carl Clarke (686692)
Margaret M. Esiri (686693)
Sharon Christie (686694)
A. David Smith (116096)
Zsuzsanna Nagy (64689)

January 2015

The p21cip1 protein and mRNA results were normalised to the equivalent value for beta-...

Protein coding mRNAs showing significant differences of polysome to cytosol ratios, adjusted p-value < 0.05.

Abstract

Extracted data

Protein coding mRNAs showing significant differences of polysome to cytosol ratios, adjusted p-value < 0.05.

Abstract

Extracted data

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