Additional file 1:Table S1. of Comparison of stranded and non-stranded RNA-seq transcriptome profiling and investigation of gene overlap

Reports the related metrics for all eight RNA-seq samples, including library sizes, the mapping summaries, and the counting summaries. Tables S2. and S3. Tabulate the overlapping summaries of Gencode V19 annotation database at both the gene and the nucleotide base levels, respectively. Figures S1. and S2. Show all-against-all scatter plots of gene expression profile among RNA-seq samples sequenced by stranded and non-stranded protocols, respectively. Figure S3. Explains why the expression level for GAPDH (a well-known housekeeping gene) is underestimated in non-stranded RNA-seq. Script 1. Contains the R script to estimate the gene overlap in Gencode Release 19. (PDF 429 kb